Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr17 18251699 . C A CCDS11196.1:NM_004169.3:c.298Gcc>Tcc_NP_004160.3:p.100A>S Homo sapiens serine hydroxymethyltransferase 1 (SHMT1), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
6m5w 1 P34896 100.0 0.0 X-RAY
 2021-01-20 ALA A:120 A:100 0.0 0.0 H -55.7 -56.7 0.0 0.0 0.0
6fl5 1 P34896 99.36 0.0 X-RAY
 2018-10-10 ALA A:90 A:100 0.0 0.0 H -56.5 -45.5 0.0 0.0 0.0
ALA B:90 D:100 0.0 0.0 H -58.2 -42.7 0.0 0.0 0.0
ALA C:90 G:100 0.0 0.0 H -53.9 -42.4 0.0 0.0 0.0
ALA D:90 J:100 0.0 0.0 H -56.7 -42.3 0.0 0.0 0.0
1bj4 1 P34896 99.36 0.0 X-RAY
 1999-08-16 ALA A:90 A:100 0.0 0.0 H -58.0 -41.2 0.0 0.0 0.0 HOH
 8.758
 CB
 O
1ls3 1 p07511 92.92 0.0 X-RAY
 2003-02-04 ALA A:99 A:82 0.0 0.0 H -63.1 -45.5 0.0 0.0 0.0 HOH
 8.152
 O
 O
ALA B:99 B:82 0.0 0.0 H -65.5 -46.4 0.0 0.0 0.0 HOH
 6.657
 C
 O
ALA C:99 C:82 0.0 0.0 H -60.4 -46.9 0.0 0.0 0.0 HOH
 6.009
 C
 O
ALA D:99 D:82 0.0 0.0 H -65.0 -48.7 0.0 0.0 0.0 HOH
 5.571
 C
 O
1rvu 1 P07511 92.71 0.0 X-RAY
 2004-06-15 ALA A:99 A:100 0.0 0.0 H -61.3 -49.8 0.0 0.0 0.0 HOH
 8.987
 CB
 O
ALA B:99 B:100 0.0 0.0 H -61.1 -49.5 0.0 0.0 0.0 HOH
 8.753
 CB
 O
1rvy 1 P07511 92.71 0.0 X-RAY
 2004-06-15 ALA A:99 A:100 0.0 0.0 H -70.2 -42.0 0.0 0.0 0.0 HOH
 8.958
 CB
 O
ALA B:99 B:100 0.0 0.0 H -70.1 -41.8 0.0 0.0 0.0 HOH
 8.803
 CB
 O
1rv3 1 P07511 92.71 0.0 X-RAY
 2004-06-15 ALA A:99 A:100 0.0 0.0 H -66.8 -45.8 0.0 0.0 0.0 HOH
 8.916
 CB
 O
ALA B:99 B:100 0.0 0.0 H -66.5 -44.1 0.0 0.0 0.0 HOH
 8.973
 CB
 O
1rv4 1 P07511 92.71 0.0 X-RAY
 2004-06-15 ALA A:99 A:100 0.0 0.0 H -65.5 -46.9 0.0 0.0 0.0 HOH
 9.215
 CB
 O
ALA B:99 B:100 0.0 0.0 H -65.8 -45.1 0.0 0.0 0.0 HOH
 9.288
 CB
 O
1cj0 1 P07511 93.4 0.0 X-RAY
 1999-05-06 ALA A:86 A:82 0.0 0.0 H -58.1 -53.8 0.0 0.0 0.0
ALA B:86 B:82 0.0 0.0 H -56.3 -55.1 0.0 0.0 0.0
1eji 1 P50431 91.19 0.0 X-RAY
 2000-11-03 ALA A:94 A:100 0.0 0.0 H -67.0 -49.4 0.0 0.0 0.0
ALA B:94 B:100 0.0 0.0 H -67.9 -47.4 0.0 0.0 0.0
ALA C:94 C:100 0.0 0.0 H -67.1 -49.6 0.0 0.0 0.0
ALA D:94 D:100 0.0 0.0 H -66.3 -49.2 0.0 0.0 0.0

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p34896-f1 1 P34896 100.0 0.0 ALA A:100 A:100 0.0 0.0 H -63.7 -48.5