Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr17 18257104 . T A CCDS11196.1:NM_004169.3:c.124Aac>Tac_NP_004160.3:p.42N>Y Homo sapiens serine hydroxymethyltransferase 1 (SHMT1), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
6m5w 1 P34896 100.0 0.0 X-RAY
 2021-01-20 ASN A:62 A:42 74.0 0.463 H -64.6 -49.0 71.0 0.444 0.019 A:P34896:0.019
6fl5 1 P34896 99.36 0.0 X-RAY
 2018-10-10 ASN A:32 A:42 93.0 0.581 H -70.8 -38.9 90.0 0.562 0.019 B:P34896:0.019
ASN B:32 D:42 76.0 0.475 H -62.5 -53.3 75.0 0.469 0.006 A:P34896:0.006
ASN C:32 G:42 76.0 0.475 H -64.4 -50.4 73.0 0.456 0.019 D:P34896:0.019
ASN D:32 J:42 75.0 0.469 H -64.4 -51.9 73.0 0.456 0.013 C:P34896:0.013
1bj4 1 P34896 99.36 0.0 X-RAY
 1999-08-16 ASN A:32 A:42 77.0 0.481 H -67.5 -44.3 77.0 0.481 0.0 HOH
 4.892
 O
 O
1ls3 1 p07511 92.92 0.0 X-RAY
 2003-02-04 ASN A:41 A:24 43.0 NA H -66.9 -46.2 43.0 NA NA HOH
 5.509
 O
 O
ASN B:41 B:24 79.0 0.494 H -70.6 -41.4 79.0 0.494 0.0 GOL
HOH
 7.784
3.638
 N
CG
 O3
O
ASN C:41 C:24 42.0 NA H -67.6 -45.1 42.0 NA NA HOH
 5.133
 CB
 O
ASN D:41 D:24 62.0 0.388 H -74.4 -39.1 62.0 0.388 0.0 HOH
 2.794
 ND2
 O
1rvu 1 P07511 92.71 0.0 X-RAY
 2004-06-15 ASN A:41 A:42 78.0 0.487 H -67.6 -36.6 78.0 0.487 0.0 HOH
 8.437
 O
 O
ASN B:41 B:42 81.0 0.506 H -67.7 -36.2 81.0 0.506 0.0 HOH
 8.590
 O
 O
1rvy 1 P07511 92.71 0.0 X-RAY
 2004-06-15 ASN A:41 A:42 84.0 0.525 H -70.7 -34.4 84.0 0.525 0.0 HOH
 8.485
 O
 O
ASN B:41 B:42 87.0 0.544 H -69.8 -34.1 87.0 0.544 0.0 HOH
 8.335
 O
 O
1rv3 1 P07511 92.71 0.0 X-RAY
 2004-06-15 ASN A:41 A:42 80.0 0.5 H -69.2 -37.1 80.0 0.5 0.0 HOH
 8.604
 O
 O
ASN B:41 B:42 80.0 0.5 H -68.9 -35.6 80.0 0.5 0.0 HOH
 8.556
 O
 O
1rv4 1 P07511 92.71 0.0 X-RAY
 2004-06-15 ASN A:41 A:42 79.0 0.494 H -70.8 -42.5 79.0 0.494 0.0 HOH
 8.421
 O
 O
ASN B:41 B:42 81.0 0.506 H -70.0 -42.6 81.0 0.506 0.0 HOH
 8.423
 O
 O
1cj0 1 P07511 93.4 0.0 X-RAY
 1999-05-06 ASN A:28 A:24 73.0 0.456 H -91.3 -39.8 72.0 0.45 0.006 B:P07511:0.006
ASN B:28 B:24 70.0 0.438 H -92.2 -39.3 69.0 0.431 0.007 A:P07511:0.006
1eji 1 P50431 91.19 0.0 X-RAY
 2000-11-03 ASN A:36 A:42 74.0 0.463 H -60.2 -53.4 74.0 0.463 0.0
ASN B:36 B:42 79.0 0.494 H -59.9 -53.9 79.0 0.494 0.0
ASN C:36 C:42 82.0 0.512 H -60.4 -55.5 82.0 0.512 0.0
ASN D:36 D:42 79.0 0.494 H -60.3 -55.0 79.0 0.494 0.0

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p34896-f1 1 P34896 100.0 0.0 ASN A:42 A:42 75.0 0.469 H -64.0 -42.5