Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr17 18259257 . G A CCDS11196.1:NM_004169.3:c.39gaC>gaT_NP_004160.3:p.13D>D Homo sapiens serine hydroxymethyltransferase 1 (SHMT1), transcript variant 1, mRNA.
pdb_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id
alphafold_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
6m5w 1 P34896 100.0 0.0 X-RAY
2021-01-20 ASP A:33 A:13 103.0 0.687 -112.9 77.2 103.0 0.687 0.0
6fl5 1 P34896 99.36 0.0 X-RAY
2018-10-10 ASP A:3 A:13 141.0 0.94 H -73.6 -40.9 141.0 0.94 0.0
ASP B:3 D:13 142.0 0.947 H -72.2 -43.5 142.0 0.947 0.0
ASP C:3 G:13 138.0 0.92 H -75.2 -41.7 138.0 0.92 0.0
ASP D:3 NA:NA DO NA DO DO DO NA NA NA
1bj4 1 P34896 99.36 0.0 X-RAY
1999-08-16 ASP A:3 A:13 141.0 0.94 H -72.9 -42.3 141.0 0.94 0.0
1ls3 1 p07511 92.92 0.0 X-RAY
2003-02-04 ALA A:12 A:-10 127.0 1.0 360.0 129.0 55.0 0.478 0.522 B:p07511:0.626
HOH
3.486
C
O
ALA B:12 NA:NA DO NA DO DO DO NA NA NA
ALA C:12 C:-10 163.0 1.0 360.0 -32.2 157.0 1.0 0.0 D:p07511:0.052
ALA D:12 NA:NA DO NA DO DO DO NA NA NA
1rvu 1 P07511 92.71 0.0 X-RAY
2004-06-15 ALA A:12 NA:NA DO NA DO DO DO NA NA NA
ALA B:12 NA:NA DO NA DO DO DO NA NA NA
1rvy 1 P07511 92.71 0.0 X-RAY
2004-06-15 ALA A:12 NA:NA DO NA DO DO DO NA NA NA
ALA B:12 NA:NA DO NA DO DO DO NA NA NA
1rv3 1 P07511 92.71 0.0 X-RAY
2004-06-15 ALA A:12 NA:NA DO NA DO DO DO NA NA NA
ALA B:12 NA:NA DO NA DO DO DO NA NA NA
1rv4 1 P07511 92.71 0.0 X-RAY
2004-06-15 ALA A:12 NA:NA DO NA DO DO DO NA NA NA
ALA B:12 NA:NA DO NA DO DO DO NA NA NA
1eji 1 P50431 91.19 0.0 X-RAY
2000-11-03 THR A:7 A:13 107.0 0.764 H -47.0 -64.1 107.0 0.764 0.0
THR B:7 B:13 65.0 0.464 T -74.0 -40.2 65.0 0.464 0.0
THR C:7 C:13 101.0 0.721 T -58.3 -71.6 101.0 0.721 0.0
THR D:7 D:13 69.0 0.493 I -73.1 -85.5 69.0 0.493 0.0

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p34896-f1 1 P34896 100.0 0.0 ASP A:13 A:13 133.0 0.887 H -70.0 -41.8