Variant
Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr17 | 34416038 | . | C | A | CCDS11307.1:NM_002983.2:c.259Gac>Tac_NP_002974.1:p.87D>Y | Homo sapiens C-C motif chemokine ligand 3 (CCL3), mRNA. |
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PDB
Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
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PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
4zkb | 2 | P10147 | 100.0 | 2e-47 |
X-RAY |
2015-07-08 | ASP | B:64 | B:64 | 92.0 | NA | 12.7 | 360.0 | 92.0 | NA | NA | |||||||
2x69 | 1 | P10147 | 100.0 | 2e-47 |
X-RAY |
2010-11-03 | ASP | A:65 | A:65 | 71.0 | 0.473 | H | -52.1 | -34.2 | NA | NA | NA | ||||||
ASP | B:65 | B:65 | 55.0 | 0.367 | H | -53.8 | -46.8 | 55.0 | 0.367 | 0.0 | |||||||||||||
ASP | C:65 | C:65 | 36.0 | 0.24 | H | -57.8 | -36.2 | 36.0 | 0.24 | 0.0 |
HOH |
7.808 |
O |
O |
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ASP | D:65 | D:65 | 57.0 | 0.38 | H | -63.4 | -30.3 | NA | NA | NA | |||||||||||||
ASP | E:65 | E:65 | 53.0 | 0.353 | H | -52.4 | -35.2 | NA | NA | NA | |||||||||||||
3h44 | 2 | P10147 | 100.0 | 2e-47 |
X-RAY |
2010-04-14 | ASP | C:65 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA | ||||||
ASP | D:65 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA | |||||||||||||
5cor | 1 | P10147 | 100.0 | 2e-47 |
X-RAY |
2016-04-13 | ASP | A:65 | A:65 | 57.0 | 0.38 | H | -61.7 | -35.1 | 57.0 | 0.38 | 0.0 |
HEZ HOH |
9.969 3.927 |
N CB |
C6 O |
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ASP | B:65 | B:65 | 50.0 | 0.333 | H | -63.9 | -37.7 | NA | NA | NA | |||||||||||||
ASP | C:65 | C:65 | 47.0 | 0.313 | H | -63.0 | -39.8 | 47.0 | 0.313 | 0.0 |
HEZ HOH |
3.674 7.033 |
CB N |
C1 O |
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ASP | D:65 | D:65 | 55.0 | 0.367 | H | -63.4 | -35.4 | NA | NA | NA | |||||||||||||
ASP | E:65 | E:65 | 47.0 | 0.313 | H | -62.7 | -37.8 | 47.0 | 0.313 | 0.0 |
HEZ HEZ HOH |
6.432 9.663 2.857 |
OD2 N OD1 |
C4 C1 O |
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ASP | F:65 | F:65 | 59.0 | 0.393 | H | -60.1 | -37.9 | NA | NA | NA | |||||||||||||
ASP | G:65 | G:65 | 48.0 | 0.32 | H | -63.3 | -37.5 | 48.0 | 0.32 | 0.0 |
HOH |
3.920 |
CB |
O |
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ASP | H:65 | H:65 | 59.0 | 0.393 | H | -58.8 | -41.5 | NA | NA | NA | |||||||||||||
ASP | I:65 | I:65 | 57.0 | 0.38 | H | -59.6 | -33.5 | 57.0 | 0.38 | 0.0 |
ACT |
7.027 |
OD2 |
CH3 |
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ASP | J:65 | J:65 | 62.0 | 0.413 | H | -64.3 | -29.3 | NA | NA | NA | |||||||||||||
5d65 | 1 | P10147 | 100.0 | 2e-47 |
X-RAY |
2016-04-20 | ASP | A:65 | A:65 | 57.0 | 0.38 | H | -66.7 | -35.4 | 57.0 | 0.38 | 0.0 |
BGC BGC BGC |
3.945 7.350 6.959 |
O OD2 N |
O2 C6 O6 |
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ASP | B:65 | B:65 | 59.0 | 0.393 | H | -65.8 | -36.2 | 59.0 | 0.393 | 0.0 |
IDS SGN IDS SGN BGC |
5.003 5.546 6.628 2.772 8.437 |
CB O OD2 OD2 N |
O6A O3S O5 O6S O3 |
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ASP | C:65 | C:65 | 57.0 | 0.38 | H | -68.1 | -39.5 | 57.0 | 0.38 | 0.0 |
BGC |
3.822 |
CB |
C6 |
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ASP | D:65 | D:65 | 84.0 | 0.56 | H | -66.4 | -26.6 | 84.0 | 0.56 | 0.0 | |||||||||||||
ASP | E:65 | E:65 | 65.0 | 0.433 | H | -63.9 | -40.4 | 65.0 | 0.433 | 0.0 | |||||||||||||
3kbx | 1 | P10147 | 97.14 | 1e-46 |
X-RAY |
2010-10-27 | ASP | A:65 | A:65 | 62.0 | 0.413 | H | -57.5 | -37.5 | 62.0 | 0.413 | 0.0 | ||||||
ASP | B:65 | B:65 | 56.0 | 0.373 | H | -55.4 | -33.4 | NA | NA | NA | |||||||||||||
ASP | C:65 | C:65 | 49.0 | 0.327 | H | -57.2 | -37.1 | NA | NA | NA | |||||||||||||
ASP | D:65 | D:65 | 68.0 | 0.453 | H | -68.4 | -30.4 | NA | NA | NA | |||||||||||||
ASP | E:65 | E:65 | 55.0 | 0.367 | H | -64.8 | -24.5 | NA | NA | NA | |||||||||||||
3fpu | 2 | P10147 | 98.55 | 3e-46 |
X-RAY |
2010-01-12 | ASP | B:65 | B:65 | 75.0 | 0.5 | H | -70.1 | -20.6 | 75.0 | 0.5 | 0.0 |
HOH |
3.718 |
CB |
O |
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2x6g | 1 | P10147 | 98.57 | 3e-46 |
X-RAY |
2010-11-03 | ASP | A:65 | A:65 | 53.0 | 0.353 | H | -50.1 | -49.6 | NA | NA | NA | ||||||
ASP | B:65 | B:65 | 65.0 | 0.433 | H | -54.8 | -40.5 | NA | NA | NA | |||||||||||||
ASP | C:65 | C:65 | 62.0 | 0.413 | H | -54.9 | -40.9 | NA | NA | NA | |||||||||||||
ASP | D:65 | D:65 | 56.0 | 0.373 | H | -58.1 | -35.3 | NA | NA | NA | |||||||||||||
ASP | E:65 | E:65 | 63.0 | 0.42 | H | -58.2 | -37.2 | NA | NA | NA | |||||||||||||
ASP | F:65 | F:65 | 58.0 | 0.387 | H | -65.9 | -43.0 | NA | NA | NA | |||||||||||||
ASP | G:65 | G:65 | 68.0 | 0.453 | H | -65.8 | -32.1 | NA | NA | NA | |||||||||||||
ASP | H:65 | H:65 | 84.0 | 0.56 | H | -62.0 | -35.7 | NA | NA | NA | |||||||||||||
ASP | I:65 | I:65 | 65.0 | 0.433 | H | -61.4 | -32.1 | NA | NA | NA | |||||||||||||
ASP | J:65 | J:65 | 56.0 | 0.373 | H | -59.3 | -35.2 | NA | NA | NA | |||||||||||||
ASP | K:65 | K:65 | 105.0 | 0.7 | H | -49.8 | -45.1 | NA | NA | NA | |||||||||||||
ASP | L:65 | L:65 | 80.0 | 0.533 | H | -60.8 | -41.1 | NA | NA | NA | |||||||||||||
ASP | M:65 | M:65 | 77.0 | 0.513 | H | -51.9 | -42.9 | NA | NA | NA | |||||||||||||
ASP | N:65 | N:65 | 72.0 | 0.48 | H | -53.6 | -37.7 | NA | NA | NA | |||||||||||||
ASP | O:65 | O:65 | 67.0 | 0.447 | H | -66.9 | -39.7 | NA | NA | NA | |||||||||||||
ASP | P:65 | P:65 | 63.0 | 0.42 | H | -66.0 | -32.7 | NA | NA | NA | |||||||||||||
ASP | Q:65 | Q:65 | 68.0 | 0.453 | H | -56.6 | -44.7 | 68.0 | 0.453 | 0.0 |
HOH |
2.899 |
OD1 |
O |
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ASP | R:65 | R:65 | 73.0 | 0.487 | H | -58.5 | -40.6 | 73.0 | 0.487 | 0.0 |
HOH |
2.459 |
OD1 |
O |
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1b50 | 1 | P10147 | 98.55 | 1e-45 |
NMR |
1999-07-22 | ASP | A:64 | A:64 | 134.0 | 0.893 | T | -43.3 | -77.2 | 134.0 | 0.893 | 0.0 | ||||||
ASP | B:64 | B:64 | 134.0 | 0.893 | T | -43.3 | -77.2 | 134.0 | 0.893 | 0.0 | |||||||||||||
1b53 | 1 | P10147 | 98.55 | 1e-45 |
NMR |
1999-07-22 | ASP | A:64 | A:64 | 127.0 | 0.847 | T | -130.1 | -20.9 | 127.0 | 0.847 | 0.0 | ||||||
ASP | B:64 | B:64 | 127.0 | 0.847 | T | -130.1 | -20.9 | 127.0 | 0.847 | 0.0 | |||||||||||||
4ra8 | 1 | P10147 | 98.55 | 1e-45 |
X-RAY |
2014-09-24 | ASP | A:65 | A:65 | 62.0 | 0.413 | H | -62.3 | -35.0 | 62.0 | 0.413 | 0.0 |
HOH |
6.644 |
N |
O |
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ASP | B:65 | B:65 | 55.0 | 0.367 | H | -60.2 | -38.8 | NA | NA | NA | |||||||||||||
ASP | C:65 | C:65 | 47.0 | 0.313 | H | -67.5 | -39.5 | NA | NA | NA | |||||||||||||
ASP | D:65 | D:65 | 68.0 | 0.453 | H | -59.6 | -35.4 | NA | NA | NA | |||||||||||||
ASP | E:65 | E:65 | 50.0 | 0.333 | H | -60.9 | -35.6 | NA | NA | NA | |||||||||||||
7f1t | 1 | P10147,P51681,P00268 | 98.55 | 3e-43 |
X-RAY |
2021-07-14 | ASP | A:64 | A:-32 | 34.0 | 0.227 | H | -63.3 | -45.7 | 34.0 | 0.227 | 0.0 | ||||||
7f1q | 1 | P10147,P51681 | 98.55 | 8e-43 |
EM |
2021-07-14 | ASP | A:64 | R:64 | 57.0 | 0.38 | H | -64.9 | -34.7 | 57.0 | 0.38 | 0.0 |
AlphaFold DB
Entity | Residue | Monomer | View | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
af-p10147-f1 | 1 | P10147 | 100.0 | 3e-64 | ASP | A:87 | A:87 | 48.0 | 0.32 | H | -63.0 | -36.1 | |
af-p16619-f1 | 1 | P16619 | 94.62 | 3e-59 | ASP | A:88 | A:88 | 50.0 | 0.333 | H | -62.9 | -35.6 |