Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr17 34416038 . C A CCDS11307.1:NM_002983.2:c.259Gac>Tac_NP_002974.1:p.87D>Y Homo sapiens C-C motif chemokine ligand 3 (CCL3), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
4zkb 2 P10147 100.0 2e-47 X-RAY
 2015-07-08 ASP B:64 B:64 92.0 NA 12.7 360.0 92.0 NA NA
2x69 1 P10147 100.0 2e-47 X-RAY
 2010-11-03 ASP A:65 A:65 71.0 0.473 H -52.1 -34.2 NA NA NA
ASP B:65 B:65 55.0 0.367 H -53.8 -46.8 55.0 0.367 0.0
ASP C:65 C:65 36.0 0.24 H -57.8 -36.2 36.0 0.24 0.0 HOH
 7.808
 O
 O
ASP D:65 D:65 57.0 0.38 H -63.4 -30.3 NA NA NA
ASP E:65 E:65 53.0 0.353 H -52.4 -35.2 NA NA NA
3h44 2 P10147 100.0 2e-47 X-RAY
 2010-04-14 ASP C:65 NA:NA DO NA DO DO DO NA NA NA
ASP D:65 NA:NA DO NA DO DO DO NA NA NA
5cor 1 P10147 100.0 2e-47 X-RAY
 2016-04-13 ASP A:65 A:65 57.0 0.38 H -61.7 -35.1 57.0 0.38 0.0 HEZ
HOH
 9.969
3.927
 N
CB
 C6
O
ASP B:65 B:65 50.0 0.333 H -63.9 -37.7 NA NA NA
ASP C:65 C:65 47.0 0.313 H -63.0 -39.8 47.0 0.313 0.0 HEZ
HOH
 3.674
7.033
 CB
N
 C1
O
ASP D:65 D:65 55.0 0.367 H -63.4 -35.4 NA NA NA
ASP E:65 E:65 47.0 0.313 H -62.7 -37.8 47.0 0.313 0.0 HEZ
HEZ
HOH
 6.432
9.663
2.857
 OD2
N
OD1
 C4
C1
O
ASP F:65 F:65 59.0 0.393 H -60.1 -37.9 NA NA NA
ASP G:65 G:65 48.0 0.32 H -63.3 -37.5 48.0 0.32 0.0 HOH
 3.920
 CB
 O
ASP H:65 H:65 59.0 0.393 H -58.8 -41.5 NA NA NA
ASP I:65 I:65 57.0 0.38 H -59.6 -33.5 57.0 0.38 0.0 ACT
 7.027
 OD2
 CH3
ASP J:65 J:65 62.0 0.413 H -64.3 -29.3 NA NA NA
5d65 1 P10147 100.0 2e-47 X-RAY
 2016-04-20 ASP A:65 A:65 57.0 0.38 H -66.7 -35.4 57.0 0.38 0.0 BGC
BGC
BGC
 3.945
7.350
6.959
 O
OD2
N
 O2
C6
O6
ASP B:65 B:65 59.0 0.393 H -65.8 -36.2 59.0 0.393 0.0 IDS
SGN
IDS
SGN
BGC
 5.003
5.546
6.628
2.772
8.437
 CB
O
OD2
OD2
N
 O6A
O3S
O5
O6S
O3
ASP C:65 C:65 57.0 0.38 H -68.1 -39.5 57.0 0.38 0.0 BGC
 3.822
 CB
 C6
ASP D:65 D:65 84.0 0.56 H -66.4 -26.6 84.0 0.56 0.0
ASP E:65 E:65 65.0 0.433 H -63.9 -40.4 65.0 0.433 0.0
3kbx 1 P10147 97.14 1e-46 X-RAY
 2010-10-27 ASP A:65 A:65 62.0 0.413 H -57.5 -37.5 62.0 0.413 0.0
ASP B:65 B:65 56.0 0.373 H -55.4 -33.4 NA NA NA
ASP C:65 C:65 49.0 0.327 H -57.2 -37.1 NA NA NA
ASP D:65 D:65 68.0 0.453 H -68.4 -30.4 NA NA NA
ASP E:65 E:65 55.0 0.367 H -64.8 -24.5 NA NA NA
3fpu 2 P10147 98.55 3e-46 X-RAY
 2010-01-12 ASP B:65 B:65 75.0 0.5 H -70.1 -20.6 75.0 0.5 0.0 HOH
 3.718
 CB
 O
2x6g 1 P10147 98.57 3e-46 X-RAY
 2010-11-03 ASP A:65 A:65 53.0 0.353 H -50.1 -49.6 NA NA NA
ASP B:65 B:65 65.0 0.433 H -54.8 -40.5 NA NA NA
ASP C:65 C:65 62.0 0.413 H -54.9 -40.9 NA NA NA
ASP D:65 D:65 56.0 0.373 H -58.1 -35.3 NA NA NA
ASP E:65 E:65 63.0 0.42 H -58.2 -37.2 NA NA NA
ASP F:65 F:65 58.0 0.387 H -65.9 -43.0 NA NA NA
ASP G:65 G:65 68.0 0.453 H -65.8 -32.1 NA NA NA
ASP H:65 H:65 84.0 0.56 H -62.0 -35.7 NA NA NA
ASP I:65 I:65 65.0 0.433 H -61.4 -32.1 NA NA NA
ASP J:65 J:65 56.0 0.373 H -59.3 -35.2 NA NA NA
ASP K:65 K:65 105.0 0.7 H -49.8 -45.1 NA NA NA
ASP L:65 L:65 80.0 0.533 H -60.8 -41.1 NA NA NA
ASP M:65 M:65 77.0 0.513 H -51.9 -42.9 NA NA NA
ASP N:65 N:65 72.0 0.48 H -53.6 -37.7 NA NA NA
ASP O:65 O:65 67.0 0.447 H -66.9 -39.7 NA NA NA
ASP P:65 P:65 63.0 0.42 H -66.0 -32.7 NA NA NA
ASP Q:65 Q:65 68.0 0.453 H -56.6 -44.7 68.0 0.453 0.0 HOH
 2.899
 OD1
 O
ASP R:65 R:65 73.0 0.487 H -58.5 -40.6 73.0 0.487 0.0 HOH
 2.459
 OD1
 O
1b50 1 P10147 98.55 1e-45 NMR
 1999-07-22 ASP A:64 A:64 134.0 0.893 T -43.3 -77.2 134.0 0.893 0.0
ASP B:64 B:64 134.0 0.893 T -43.3 -77.2 134.0 0.893 0.0
1b53 1 P10147 98.55 1e-45 NMR
 1999-07-22 ASP A:64 A:64 127.0 0.847 T -130.1 -20.9 127.0 0.847 0.0
ASP B:64 B:64 127.0 0.847 T -130.1 -20.9 127.0 0.847 0.0
4ra8 1 P10147 98.55 1e-45 X-RAY
 2014-09-24 ASP A:65 A:65 62.0 0.413 H -62.3 -35.0 62.0 0.413 0.0 HOH
 6.644
 N
 O
ASP B:65 B:65 55.0 0.367 H -60.2 -38.8 NA NA NA
ASP C:65 C:65 47.0 0.313 H -67.5 -39.5 NA NA NA
ASP D:65 D:65 68.0 0.453 H -59.6 -35.4 NA NA NA
ASP E:65 E:65 50.0 0.333 H -60.9 -35.6 NA NA NA
7f1t 1 P10147,P51681,P00268 98.55 3e-43 X-RAY
 2021-07-14 ASP A:64 A:-32 34.0 0.227 H -63.3 -45.7 34.0 0.227 0.0
7f1q 1 P10147,P51681 98.55 8e-43 EM
 2021-07-14 ASP A:64 R:64 57.0 0.38 H -64.9 -34.7 57.0 0.38 0.0

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p10147-f1 1 P10147 100.0 3e-64 ASP A:87 A:87 48.0 0.32 H -63.0 -36.1
af-p16619-f1 1 P16619 94.62 3e-59 ASP A:88 A:88 50.0 0.333 H -62.9 -35.6