Variant
Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr17 | 34416049 | . | T | A | CCDS11307.1:NM_002983.2:c.248aAa>aTa_NP_002974.1:p.83K>I | Homo sapiens C-C motif chemokine ligand 3 (CCL3), mRNA. |
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PDB
Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
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PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
4zkb | 2 | P10147 | 100.0 | 2e-47 |
X-RAY |
2015-07-08 | LYS | B:60 | B:60 | 60.0 | NA | I | -95.1 | -18.6 | 60.0 | NA | NA | ||||||
2x69 | 1 | P10147 | 100.0 | 2e-47 |
X-RAY |
2010-11-03 | LYS | A:61 | A:61 | 102.0 | 0.51 | H | -55.2 | -50.4 | NA | NA | NA | ||||||
LYS | B:61 | B:61 | 107.0 | 0.535 | H | -62.1 | -52.3 | 107.0 | 0.535 | 0.0 |
HOH |
9.127 |
N |
O |
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LYS | C:61 | C:61 | 113.0 | 0.565 | H | -58.3 | -47.8 | 113.0 | 0.565 | 0.0 | |||||||||||||
LYS | D:61 | D:61 | 107.0 | 0.535 | H | -54.8 | -53.1 | NA | NA | NA | |||||||||||||
LYS | E:61 | E:61 | 111.0 | 0.555 | H | -61.2 | -48.8 | NA | NA | NA | |||||||||||||
3h44 | 2 | P10147 | 100.0 | 2e-47 |
X-RAY |
2010-04-14 | LYS | C:61 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA | ||||||
LYS | D:61 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA | |||||||||||||
5cor | 1 | P10147 | 100.0 | 2e-47 |
X-RAY |
2016-04-13 | LYS | A:61 | A:61 | 99.0 | 0.495 | H | -65.8 | -45.7 | 99.0 | 0.495 | 0.0 |
HEZ HOH |
9.702 5.310 |
N O |
O6 O |
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LYS | B:61 | B:61 | 104.0 | 0.52 | H | -65.8 | -44.2 | NA | NA | NA | |||||||||||||
LYS | C:61 | C:61 | 106.0 | 0.53 | H | -68.7 | -42.0 | 106.0 | 0.53 | 0.0 |
HEZ HOH |
5.652 4.947 |
O N |
O1 O |
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LYS | D:61 | D:61 | 100.0 | 0.5 | H | -59.3 | -50.0 | NA | NA | NA | |||||||||||||
LYS | E:61 | E:61 | 103.0 | 0.515 | H | -68.6 | -42.9 | 103.0 | 0.515 | 0.0 |
HEZ HEZ HOH |
4.415 8.857 4.158 |
CG N CE |
C6 O1 O |
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LYS | F:61 | F:61 | 86.0 | 0.43 | H | -65.7 | -43.6 | NA | NA | NA | |||||||||||||
LYS | G:61 | G:61 | 99.0 | 0.495 | H | -64.6 | -44.8 | 99.0 | 0.495 | 0.0 |
HOH |
3.864 |
CE |
O |
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LYS | H:61 | H:61 | 97.0 | 0.485 | H | -67.8 | -47.2 | NA | NA | NA | |||||||||||||
LYS | I:61 | I:61 | 105.0 | 0.525 | H | -60.2 | -47.0 | 105.0 | 0.525 | 0.0 |
ACT HOH |
3.450 7.374 |
CD CB |
O O |
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LYS | J:61 | J:61 | 98.0 | 0.49 | H | -66.1 | -43.0 | NA | NA | NA | |||||||||||||
5d65 | 1 | P10147 | 100.0 | 2e-47 |
X-RAY |
2016-04-20 | LYS | A:61 | A:61 | 97.0 | 0.485 | H | -70.9 | -43.3 | 97.0 | 0.485 | 0.0 |
BGC BGC BGC |
7.959 3.598 4.336 |
O CD N |
O2 C6 O6 |
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LYS | B:61 | B:61 | 104.0 | 0.52 | H | -69.8 | -41.6 | 104.0 | 0.52 | 0.0 |
IDS IDS SGN BGC |
7.592 3.203 3.191 6.354 |
O CD NZ N |
O6A O2S O6S O3 |
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LYS | C:61 | C:61 | 116.0 | 0.58 | H | -74.5 | -37.2 | 116.0 | 0.58 | 0.0 |
BGC |
5.933 |
O |
O6 |
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LYS | D:61 | D:61 | 114.0 | 0.57 | H | -64.6 | -41.0 | 114.0 | 0.57 | 0.0 | |||||||||||||
LYS | E:61 | E:61 | 120.0 | 0.6 | H | -71.4 | -37.4 | 120.0 | 0.6 | 0.0 | |||||||||||||
3kbx | 1 | P10147 | 97.14 | 1e-46 |
X-RAY |
2010-10-27 | LYS | A:61 | A:61 | 96.0 | 0.48 | H | -44.2 | -63.9 | 96.0 | 0.48 | 0.0 | ||||||
LYS | B:61 | B:61 | 109.0 | 0.545 | H | -59.3 | -53.7 | NA | NA | NA | |||||||||||||
LYS | C:61 | C:61 | 103.0 | 0.515 | H | -66.7 | -40.0 | NA | NA | NA | |||||||||||||
LYS | D:61 | D:61 | 105.0 | 0.525 | H | -47.0 | -50.9 | NA | NA | NA | |||||||||||||
LYS | E:61 | E:61 | 105.0 | 0.525 | H | -63.4 | -44.8 | NA | NA | NA | |||||||||||||
3fpu | 2 | P10147 | 98.55 | 3e-46 |
X-RAY |
2010-01-12 | LYS | B:61 | B:61 | 110.0 | 0.55 | H | -58.0 | -48.9 | 110.0 | 0.55 | 0.0 |
HOH |
4.753 |
O |
O |
||
2x6g | 1 | P10147 | 98.57 | 3e-46 |
X-RAY |
2010-11-03 | LYS | A:61 | A:61 | 88.0 | 0.44 | H | -61.9 | -46.6 | NA | NA | NA | ||||||
LYS | B:61 | B:61 | 124.0 | 0.62 | H | -63.0 | -42.3 | NA | NA | NA | |||||||||||||
LYS | C:61 | C:61 | 82.0 | 0.41 | H | -75.8 | -36.3 | NA | NA | NA | |||||||||||||
LYS | D:61 | D:61 | 106.0 | 0.53 | H | -69.3 | -41.9 | NA | NA | NA | |||||||||||||
LYS | E:61 | E:61 | 90.0 | 0.45 | H | -62.0 | -45.5 | NA | NA | NA | |||||||||||||
LYS | F:61 | F:61 | 103.0 | 0.515 | H | -54.0 | -51.8 | NA | NA | NA | |||||||||||||
LYS | G:61 | G:61 | 107.0 | 0.535 | H | -61.5 | -52.4 | NA | NA | NA | |||||||||||||
LYS | H:61 | H:61 | 118.0 | 0.59 | H | -63.5 | -44.4 | NA | NA | NA | |||||||||||||
LYS | I:61 | I:61 | 103.0 | 0.515 | H | -73.4 | -39.4 | NA | NA | NA | |||||||||||||
LYS | J:61 | J:61 | 99.0 | 0.495 | H | -59.3 | -50.4 | NA | NA | NA | |||||||||||||
LYS | K:61 | K:61 | 85.0 | 0.425 | H | -52.2 | -62.2 | NA | NA | NA | |||||||||||||
LYS | L:61 | L:61 | 108.0 | 0.54 | H | -68.4 | -41.6 | NA | NA | NA | |||||||||||||
LYS | M:61 | M:61 | 92.0 | 0.46 | H | -59.0 | -47.9 | NA | NA | NA | |||||||||||||
LYS | N:61 | N:61 | 104.0 | 0.52 | H | -51.2 | -49.1 | NA | NA | NA | |||||||||||||
LYS | O:61 | O:61 | 115.0 | 0.575 | H | -69.5 | -38.9 | NA | NA | NA | |||||||||||||
LYS | P:61 | P:61 | 111.0 | 0.555 | H | -63.0 | -41.6 | NA | NA | NA | |||||||||||||
LYS | Q:61 | Q:61 | 109.0 | 0.545 | H | -69.7 | -44.7 | 109.0 | 0.545 | 0.0 |
HOH |
4.287 |
O |
O |
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LYS | R:61 | R:61 | 90.0 | 0.45 | H | -50.9 | -51.8 | 90.0 | 0.45 | 0.0 |
HOH |
4.870 |
O |
O |
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1b50 | 1 | P10147 | 98.55 | 1e-45 |
NMR |
1999-07-22 | LYS | A:60 | A:60 | 137.0 | 0.685 | H | -73.7 | -52.4 | 137.0 | 0.685 | 0.0 | ||||||
LYS | B:60 | B:60 | 136.0 | 0.68 | H | -73.6 | -52.3 | 136.0 | 0.68 | 0.0 | |||||||||||||
1b53 | 1 | P10147 | 98.55 | 1e-45 |
NMR |
1999-07-22 | LYS | A:60 | A:60 | 116.0 | 0.58 | H | -92.7 | -53.6 | 116.0 | 0.58 | 0.0 | ||||||
LYS | B:60 | B:60 | 116.0 | 0.58 | H | -92.7 | -53.7 | 116.0 | 0.58 | 0.0 | |||||||||||||
4ra8 | 1 | P10147 | 98.55 | 1e-45 |
X-RAY |
2014-09-24 | LYS | A:61 | A:61 | 100.0 | 0.5 | H | -66.0 | -46.5 | 100.0 | 0.5 | 0.0 |
HOH |
4.596 |
N |
O |
||
LYS | B:61 | B:61 | 99.0 | 0.495 | H | -62.2 | -48.7 | NA | NA | NA | |||||||||||||
LYS | C:61 | C:61 | 106.0 | 0.53 | H | -67.1 | -47.6 | NA | NA | NA | |||||||||||||
LYS | D:61 | D:61 | 129.0 | 0.645 | H | -69.0 | -42.9 | NA | NA | NA | |||||||||||||
LYS | E:61 | E:61 | 103.0 | 0.515 | H | -76.8 | -43.0 | NA | NA | NA | |||||||||||||
7f1t | 1 | P10147,P51681,P00268 | 98.55 | 3e-43 |
X-RAY |
2021-07-14 | LYS | A:60 | A:-36 | 114.0 | 0.57 | H | -73.7 | -40.0 | 114.0 | 0.57 | 0.0 | ||||||
7f1q | 1 | P10147,P51681 | 98.55 | 8e-43 |
EM |
2021-07-14 | LYS | A:60 | R:60 | 102.0 | 0.51 | H | -61.3 | -42.1 | 102.0 | 0.51 | 0.0 |
AlphaFold DB
Entity | Residue | Monomer | View | ||||||||||
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ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
af-p10147-f1 | 1 | P10147 | 100.0 | 3e-64 | LYS | A:83 | A:83 | 109.0 | 0.545 | H | -58.8 | -46.2 | |
af-p16619-f1 | 1 | P16619 | 94.62 | 3e-59 | LYS | A:84 | A:84 | 111.0 | 0.555 | H | -58.5 | -46.3 |