Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr17 34416049 . T A CCDS11307.1:NM_002983.2:c.248aAa>aTa_NP_002974.1:p.83K>I Homo sapiens C-C motif chemokine ligand 3 (CCL3), mRNA.
pdb_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id
alphafold_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
4zkb 2 P10147 100.0 2e-47 X-RAY
2015-07-08 LYS B:60 B:60 60.0 NA I -95.1 -18.6 60.0 NA NA
2x69 1 P10147 100.0 2e-47 X-RAY
2010-11-03 LYS A:61 A:61 102.0 0.51 H -55.2 -50.4 NA NA NA
LYS B:61 B:61 107.0 0.535 H -62.1 -52.3 107.0 0.535 0.0 HOH
9.127
N
O
LYS C:61 C:61 113.0 0.565 H -58.3 -47.8 113.0 0.565 0.0
LYS D:61 D:61 107.0 0.535 H -54.8 -53.1 NA NA NA
LYS E:61 E:61 111.0 0.555 H -61.2 -48.8 NA NA NA
3h44 2 P10147 100.0 2e-47 X-RAY
2010-04-14 LYS C:61 NA:NA DO NA DO DO DO NA NA NA
LYS D:61 NA:NA DO NA DO DO DO NA NA NA
5cor 1 P10147 100.0 2e-47 X-RAY
2016-04-13 LYS A:61 A:61 99.0 0.495 H -65.8 -45.7 99.0 0.495 0.0 HEZ
HOH
9.702
5.310
N
O
O6
O
LYS B:61 B:61 104.0 0.52 H -65.8 -44.2 NA NA NA
LYS C:61 C:61 106.0 0.53 H -68.7 -42.0 106.0 0.53 0.0 HEZ
HOH
5.652
4.947
O
N
O1
O
LYS D:61 D:61 100.0 0.5 H -59.3 -50.0 NA NA NA
LYS E:61 E:61 103.0 0.515 H -68.6 -42.9 103.0 0.515 0.0 HEZ
HEZ
HOH
4.415
8.857
4.158
CG
N
CE
C6
O1
O
LYS F:61 F:61 86.0 0.43 H -65.7 -43.6 NA NA NA
LYS G:61 G:61 99.0 0.495 H -64.6 -44.8 99.0 0.495 0.0 HOH
3.864
CE
O
LYS H:61 H:61 97.0 0.485 H -67.8 -47.2 NA NA NA
LYS I:61 I:61 105.0 0.525 H -60.2 -47.0 105.0 0.525 0.0 ACT
HOH
3.450
7.374
CD
CB
O
O
LYS J:61 J:61 98.0 0.49 H -66.1 -43.0 NA NA NA
5d65 1 P10147 100.0 2e-47 X-RAY
2016-04-20 LYS A:61 A:61 97.0 0.485 H -70.9 -43.3 97.0 0.485 0.0 BGC
BGC
BGC
7.959
3.598
4.336
O
CD
N
O2
C6
O6
LYS B:61 B:61 104.0 0.52 H -69.8 -41.6 104.0 0.52 0.0 IDS
IDS
SGN
BGC
7.592
3.203
3.191
6.354
O
CD
NZ
N
O6A
O2S
O6S
O3
LYS C:61 C:61 116.0 0.58 H -74.5 -37.2 116.0 0.58 0.0 BGC
5.933
O
O6
LYS D:61 D:61 114.0 0.57 H -64.6 -41.0 114.0 0.57 0.0
LYS E:61 E:61 120.0 0.6 H -71.4 -37.4 120.0 0.6 0.0
3kbx 1 P10147 97.14 1e-46 X-RAY
2010-10-27 LYS A:61 A:61 96.0 0.48 H -44.2 -63.9 96.0 0.48 0.0
LYS B:61 B:61 109.0 0.545 H -59.3 -53.7 NA NA NA
LYS C:61 C:61 103.0 0.515 H -66.7 -40.0 NA NA NA
LYS D:61 D:61 105.0 0.525 H -47.0 -50.9 NA NA NA
LYS E:61 E:61 105.0 0.525 H -63.4 -44.8 NA NA NA
3fpu 2 P10147 98.55 3e-46 X-RAY
2010-01-12 LYS B:61 B:61 110.0 0.55 H -58.0 -48.9 110.0 0.55 0.0 HOH
4.753
O
O
2x6g 1 P10147 98.57 3e-46 X-RAY
2010-11-03 LYS A:61 A:61 88.0 0.44 H -61.9 -46.6 NA NA NA
LYS B:61 B:61 124.0 0.62 H -63.0 -42.3 NA NA NA
LYS C:61 C:61 82.0 0.41 H -75.8 -36.3 NA NA NA
LYS D:61 D:61 106.0 0.53 H -69.3 -41.9 NA NA NA
LYS E:61 E:61 90.0 0.45 H -62.0 -45.5 NA NA NA
LYS F:61 F:61 103.0 0.515 H -54.0 -51.8 NA NA NA
LYS G:61 G:61 107.0 0.535 H -61.5 -52.4 NA NA NA
LYS H:61 H:61 118.0 0.59 H -63.5 -44.4 NA NA NA
LYS I:61 I:61 103.0 0.515 H -73.4 -39.4 NA NA NA
LYS J:61 J:61 99.0 0.495 H -59.3 -50.4 NA NA NA
LYS K:61 K:61 85.0 0.425 H -52.2 -62.2 NA NA NA
LYS L:61 L:61 108.0 0.54 H -68.4 -41.6 NA NA NA
LYS M:61 M:61 92.0 0.46 H -59.0 -47.9 NA NA NA
LYS N:61 N:61 104.0 0.52 H -51.2 -49.1 NA NA NA
LYS O:61 O:61 115.0 0.575 H -69.5 -38.9 NA NA NA
LYS P:61 P:61 111.0 0.555 H -63.0 -41.6 NA NA NA
LYS Q:61 Q:61 109.0 0.545 H -69.7 -44.7 109.0 0.545 0.0 HOH
4.287
O
O
LYS R:61 R:61 90.0 0.45 H -50.9 -51.8 90.0 0.45 0.0 HOH
4.870
O
O
1b50 1 P10147 98.55 1e-45 NMR
1999-07-22 LYS A:60 A:60 137.0 0.685 H -73.7 -52.4 137.0 0.685 0.0
LYS B:60 B:60 136.0 0.68 H -73.6 -52.3 136.0 0.68 0.0
1b53 1 P10147 98.55 1e-45 NMR
1999-07-22 LYS A:60 A:60 116.0 0.58 H -92.7 -53.6 116.0 0.58 0.0
LYS B:60 B:60 116.0 0.58 H -92.7 -53.7 116.0 0.58 0.0
4ra8 1 P10147 98.55 1e-45 X-RAY
2014-09-24 LYS A:61 A:61 100.0 0.5 H -66.0 -46.5 100.0 0.5 0.0 HOH
4.596
N
O
LYS B:61 B:61 99.0 0.495 H -62.2 -48.7 NA NA NA
LYS C:61 C:61 106.0 0.53 H -67.1 -47.6 NA NA NA
LYS D:61 D:61 129.0 0.645 H -69.0 -42.9 NA NA NA
LYS E:61 E:61 103.0 0.515 H -76.8 -43.0 NA NA NA
7f1t 1 P10147,P51681,P00268 98.55 3e-43 X-RAY
2021-07-14 LYS A:60 A:-36 114.0 0.57 H -73.7 -40.0 114.0 0.57 0.0
7f1q 1 P10147,P51681 98.55 8e-43 EM
2021-07-14 LYS A:60 R:60 102.0 0.51 H -61.3 -42.1 102.0 0.51 0.0

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p10147-f1 1 P10147 100.0 3e-64 LYS A:83 A:83 109.0 0.545 H -58.8 -46.2
af-p16619-f1 1 P16619 94.62 3e-59 LYS A:84 A:84 111.0 0.555 H -58.5 -46.3