Variant
Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr17 | 34416063 | . | C | A | CCDS11307.1:NM_002983.2:c.234gaG>gaT_NP_002974.1:p.78E>D | Homo sapiens C-C motif chemokine ligand 3 (CCL3), mRNA. |
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PDB
Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
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PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
4zkb | 2 | P10147 | 100.0 | 2e-47 |
X-RAY |
2015-07-08 | GLU | B:55 | B:55 | 77.0 | NA | S | -154.8 | -46.0 | 77.0 | NA | NA | ||||||
2x69 | 1 | P10147 | 100.0 | 2e-47 |
X-RAY |
2010-11-03 | GLU | A:56 | A:56 | 77.0 | 0.405 | S | -78.9 | 149.7 | NA | NA | NA | ||||||
GLU | B:56 | B:56 | 68.0 | 0.358 | S | -79.9 | 142.0 | 68.0 | 0.358 | 0.0 |
HOH |
2.362 |
OE1 |
O |
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GLU | C:56 | C:56 | 68.0 | 0.358 | S | -78.2 | 140.8 | 68.0 | 0.358 | 0.0 | |||||||||||||
GLU | D:56 | D:56 | 62.0 | 0.326 | S | -56.9 | 140.5 | NA | NA | NA | |||||||||||||
GLU | E:56 | E:56 | 79.0 | 0.416 | S | -78.6 | 123.0 | NA | NA | NA | |||||||||||||
3h44 | 2 | P10147 | 100.0 | 2e-47 |
X-RAY |
2010-04-14 | GLU | C:56 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA | ||||||
GLU | D:56 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA | |||||||||||||
5cor | 1 | P10147 | 100.0 | 2e-47 |
X-RAY |
2016-04-13 | GLU | A:56 | A:56 | 65.0 | 0.342 | S | -72.8 | 147.8 | 65.0 | 0.342 | 0.0 |
HOH |
3.699 |
OE2 |
O |
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GLU | B:56 | B:56 | 63.0 | 0.332 | S | -73.3 | 140.3 | NA | NA | NA | |||||||||||||
GLU | C:56 | C:56 | 76.0 | 0.4 | S | -86.7 | 136.8 | 76.0 | 0.4 | 0.0 |
HOH |
2.662 |
OE1 |
O |
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GLU | D:56 | D:56 | 64.0 | 0.337 | S | -73.9 | 143.6 | NA | NA | NA | |||||||||||||
GLU | E:56 | E:56 | 92.0 | 0.484 | S | -72.5 | 142.5 | 92.0 | 0.484 | 0.0 |
HEZ HEZ HOH |
8.258 9.133 4.112 |
C O CG |
O6 O1 O |
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GLU | F:56 | F:56 | 64.0 | 0.337 | S | -70.1 | 140.9 | NA | NA | NA | |||||||||||||
GLU | G:56 | G:56 | 61.0 | 0.321 | S | -81.5 | 140.9 | 61.0 | 0.321 | 0.0 |
HOH |
9.442 |
OE2 |
O |
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GLU | H:56 | H:56 | 91.0 | 0.479 | S | -69.5 | 134.7 | NA | NA | NA | |||||||||||||
GLU | I:56 | I:56 | 61.0 | 0.321 | S | -71.2 | 143.8 | 61.0 | 0.321 | 0.0 |
ACT HOH |
7.913 3.318 |
C OE1 |
O O |
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GLU | J:56 | J:56 | 58.0 | 0.305 | S | -86.2 | 144.1 | NA | NA | NA | |||||||||||||
5d65 | 1 | P10147 | 100.0 | 2e-47 |
X-RAY |
2016-04-20 | GLU | A:56 | A:56 | 50.0 | 0.263 | S | -72.8 | 152.1 | 50.0 | 0.263 | 0.0 |
BGC BGC BGC BGC |
7.539 3.756 7.198 7.118 |
N N OE1 O |
C6 O2 O3 C6 |
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GLU | B:56 | B:56 | 68.0 | 0.358 | S | -68.9 | 135.4 | 68.0 | 0.358 | 0.0 |
IDS BGC |
9.221 7.252 |
O O |
O2S O2 |
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GLU | C:56 | C:56 | 46.0 | 0.242 | S | -66.1 | 139.7 | 46.0 | 0.242 | 0.0 | |||||||||||||
GLU | D:56 | D:56 | 72.0 | 0.379 | S | -68.2 | 159.9 | 72.0 | 0.379 | 0.0 | |||||||||||||
GLU | E:56 | E:56 | 65.0 | 0.342 | S | -63.0 | 139.9 | 65.0 | 0.342 | 0.0 | |||||||||||||
3kbx | 1 | P10147 | 97.14 | 1e-46 |
X-RAY |
2010-10-27 | GLU | A:56 | A:56 | 62.0 | 0.326 | S | -100.5 | 136.2 | 62.0 | 0.326 | 0.0 |
HOH |
3.244 |
OE2 |
O |
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GLU | B:56 | B:56 | 64.0 | 0.337 | S | -78.4 | 138.2 | NA | NA | NA | |||||||||||||
GLU | C:56 | C:56 | 63.0 | 0.332 | S | -106.8 | 145.8 | NA | NA | NA | |||||||||||||
GLU | D:56 | D:56 | 58.0 | 0.305 | S | -83.1 | 128.8 | NA | NA | NA | |||||||||||||
GLU | E:56 | E:56 | 62.0 | 0.326 | S | -103.5 | 140.2 | NA | NA | NA | |||||||||||||
3fpu | 2 | P10147 | 98.55 | 3e-46 |
X-RAY |
2010-01-12 | GLU | B:56 | B:56 | 72.0 | 0.379 | S | -76.4 | 138.1 | 68.0 | 0.358 | 0.021 |
A:P0C8E7:0.021 |
HOH |
2.847 |
OE1 |
O |
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2x6g | 1 | P10147 | 98.57 | 3e-46 |
X-RAY |
2010-11-03 | GLU | A:56 | A:56 | 104.0 | 0.547 | S | -74.9 | 141.8 | NA | NA | NA | ||||||
GLU | B:56 | B:56 | 72.0 | 0.379 | S | -78.1 | 136.1 | NA | NA | NA | |||||||||||||
GLU | C:56 | C:56 | 62.0 | 0.326 | S | -83.9 | 126.6 | NA | NA | NA | |||||||||||||
GLU | D:56 | D:56 | 62.0 | 0.326 | S | -86.2 | 140.5 | NA | NA | NA | |||||||||||||
GLU | E:56 | E:56 | 63.0 | 0.332 | S | -84.5 | 140.4 | NA | NA | NA | |||||||||||||
GLU | F:56 | F:56 | 107.0 | 0.563 | S | -80.2 | 134.6 | NA | NA | NA | |||||||||||||
GLU | G:56 | G:56 | 64.0 | 0.337 | S | -88.1 | 138.4 | NA | NA | NA | |||||||||||||
GLU | H:56 | H:56 | 52.0 | 0.274 | S | -90.1 | 130.8 | NA | NA | NA | |||||||||||||
GLU | I:56 | I:56 | 73.0 | 0.384 | S | -82.9 | 152.1 | NA | NA | NA | |||||||||||||
GLU | J:56 | J:56 | 60.0 | 0.316 | S | -92.3 | 138.1 | NA | NA | NA | |||||||||||||
GLU | K:56 | K:56 | 69.0 | 0.363 | S | -125.0 | 134.5 | NA | NA | NA | |||||||||||||
GLU | L:56 | L:56 | 62.0 | 0.326 | S | -83.0 | 156.6 | NA | NA | NA | |||||||||||||
GLU | M:56 | M:56 | 69.0 | 0.363 | S | -88.6 | 138.4 | NA | NA | NA | |||||||||||||
GLU | N:56 | N:56 | 70.0 | 0.368 | S | -87.9 | 145.2 | NA | NA | NA | |||||||||||||
GLU | O:56 | O:56 | 69.0 | 0.363 | S | -77.1 | 148.0 | NA | NA | NA | |||||||||||||
GLU | P:56 | P:56 | 70.0 | 0.368 | S | -52.4 | 136.4 | NA | NA | NA | |||||||||||||
GLU | Q:56 | Q:56 | 81.0 | 0.426 | S | -75.5 | 149.6 | 81.0 | 0.426 | 0.0 |
HOH |
7.828 |
O |
O |
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GLU | R:56 | R:56 | 74.0 | 0.389 | S | -88.1 | 151.9 | 74.0 | 0.389 | 0.0 |
HOH |
4.919 |
O |
O |
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1b50 | 1 | P10147 | 98.55 | 1e-45 |
NMR |
1999-07-22 | GLU | A:55 | A:55 | 39.0 | 0.205 | -62.2 | 132.9 | 39.0 | 0.205 | 0.0 | |||||||
GLU | B:55 | B:55 | 39.0 | 0.205 | -62.1 | 132.9 | 39.0 | 0.205 | 0.0 | ||||||||||||||
1b53 | 1 | P10147 | 98.55 | 1e-45 |
NMR |
1999-07-22 | GLU | A:55 | A:55 | 38.0 | 0.2 | -61.1 | 147.0 | 38.0 | 0.2 | 0.0 | |||||||
GLU | B:55 | B:55 | 37.0 | 0.195 | -61.2 | 147.0 | 37.0 | 0.195 | 0.0 | ||||||||||||||
4ra8 | 1 | P10147 | 98.55 | 1e-45 |
X-RAY |
2014-09-24 | GLU | A:56 | A:56 | 86.0 | 0.453 | S | -72.5 | 142.6 | 86.0 | 0.453 | 0.0 |
HOH |
7.091 |
O |
O |
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GLU | B:56 | B:56 | 67.0 | 0.353 | S | -82.8 | 139.0 | NA | NA | NA | |||||||||||||
GLU | C:56 | C:56 | 48.0 | 0.253 | S | -99.7 | 148.5 | NA | NA | NA | |||||||||||||
GLU | D:56 | D:56 | 74.0 | 0.389 | S | -71.9 | 143.2 | NA | NA | NA | |||||||||||||
GLU | E:56 | E:56 | 70.0 | 0.368 | S | -62.6 | 136.9 | NA | NA | NA | |||||||||||||
7f1t | 1 | P10147,P51681,P00268 | 98.55 | 3e-43 |
X-RAY |
2021-07-14 | GLU | A:55 | A:-41 | 80.0 | 0.421 | S | -76.6 | 143.8 | 80.0 | 0.421 | 0.0 | ||||||
7f1q | 1 | P10147,P51681 | 98.55 | 8e-43 |
EM |
2021-07-14 | GLU | A:55 | R:55 | 63.0 | 0.332 | S | -67.8 | 165.0 | 63.0 | 0.332 | 0.0 |
AlphaFold DB
Entity | Residue | Monomer | View | ||||||||||
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ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
af-p10147-f1 | 1 | P10147 | 100.0 | 3e-64 | GLU | A:78 | A:78 | 71.0 | 0.374 | S | -81.9 | 134.2 | |
af-p16619-f1 | 1 | P16619 | 94.62 | 3e-59 | GLU | A:79 | A:79 | 70.0 | 0.368 | S | -80.0 | 134.2 |