Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr17 34416063 . C A CCDS11307.1:NM_002983.2:c.234gaG>gaT_NP_002974.1:p.78E>D Homo sapiens C-C motif chemokine ligand 3 (CCL3), mRNA.
pdb_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id
alphafold_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
4zkb 2 P10147 100.0 2e-47 X-RAY
2015-07-08 GLU B:55 B:55 77.0 NA S -154.8 -46.0 77.0 NA NA
2x69 1 P10147 100.0 2e-47 X-RAY
2010-11-03 GLU A:56 A:56 77.0 0.405 S -78.9 149.7 NA NA NA
GLU B:56 B:56 68.0 0.358 S -79.9 142.0 68.0 0.358 0.0 HOH
2.362
OE1
O
GLU C:56 C:56 68.0 0.358 S -78.2 140.8 68.0 0.358 0.0
GLU D:56 D:56 62.0 0.326 S -56.9 140.5 NA NA NA
GLU E:56 E:56 79.0 0.416 S -78.6 123.0 NA NA NA
3h44 2 P10147 100.0 2e-47 X-RAY
2010-04-14 GLU C:56 NA:NA DO NA DO DO DO NA NA NA
GLU D:56 NA:NA DO NA DO DO DO NA NA NA
5cor 1 P10147 100.0 2e-47 X-RAY
2016-04-13 GLU A:56 A:56 65.0 0.342 S -72.8 147.8 65.0 0.342 0.0 HOH
3.699
OE2
O
GLU B:56 B:56 63.0 0.332 S -73.3 140.3 NA NA NA
GLU C:56 C:56 76.0 0.4 S -86.7 136.8 76.0 0.4 0.0 HOH
2.662
OE1
O
GLU D:56 D:56 64.0 0.337 S -73.9 143.6 NA NA NA
GLU E:56 E:56 92.0 0.484 S -72.5 142.5 92.0 0.484 0.0 HEZ
HEZ
HOH
8.258
9.133
4.112
C
O
CG
O6
O1
O
GLU F:56 F:56 64.0 0.337 S -70.1 140.9 NA NA NA
GLU G:56 G:56 61.0 0.321 S -81.5 140.9 61.0 0.321 0.0 HOH
9.442
OE2
O
GLU H:56 H:56 91.0 0.479 S -69.5 134.7 NA NA NA
GLU I:56 I:56 61.0 0.321 S -71.2 143.8 61.0 0.321 0.0 ACT
HOH
7.913
3.318
C
OE1
O
O
GLU J:56 J:56 58.0 0.305 S -86.2 144.1 NA NA NA
5d65 1 P10147 100.0 2e-47 X-RAY
2016-04-20 GLU A:56 A:56 50.0 0.263 S -72.8 152.1 50.0 0.263 0.0 BGC
BGC
BGC
BGC
7.539
3.756
7.198
7.118
N
N
OE1
O
C6
O2
O3
C6
GLU B:56 B:56 68.0 0.358 S -68.9 135.4 68.0 0.358 0.0 IDS
BGC
9.221
7.252
O
O
O2S
O2
GLU C:56 C:56 46.0 0.242 S -66.1 139.7 46.0 0.242 0.0
GLU D:56 D:56 72.0 0.379 S -68.2 159.9 72.0 0.379 0.0
GLU E:56 E:56 65.0 0.342 S -63.0 139.9 65.0 0.342 0.0
3kbx 1 P10147 97.14 1e-46 X-RAY
2010-10-27 GLU A:56 A:56 62.0 0.326 S -100.5 136.2 62.0 0.326 0.0 HOH
3.244
OE2
O
GLU B:56 B:56 64.0 0.337 S -78.4 138.2 NA NA NA
GLU C:56 C:56 63.0 0.332 S -106.8 145.8 NA NA NA
GLU D:56 D:56 58.0 0.305 S -83.1 128.8 NA NA NA
GLU E:56 E:56 62.0 0.326 S -103.5 140.2 NA NA NA
3fpu 2 P10147 98.55 3e-46 X-RAY
2010-01-12 GLU B:56 B:56 72.0 0.379 S -76.4 138.1 68.0 0.358 0.021 A:P0C8E7:0.021
HOH
2.847
OE1
O
2x6g 1 P10147 98.57 3e-46 X-RAY
2010-11-03 GLU A:56 A:56 104.0 0.547 S -74.9 141.8 NA NA NA
GLU B:56 B:56 72.0 0.379 S -78.1 136.1 NA NA NA
GLU C:56 C:56 62.0 0.326 S -83.9 126.6 NA NA NA
GLU D:56 D:56 62.0 0.326 S -86.2 140.5 NA NA NA
GLU E:56 E:56 63.0 0.332 S -84.5 140.4 NA NA NA
GLU F:56 F:56 107.0 0.563 S -80.2 134.6 NA NA NA
GLU G:56 G:56 64.0 0.337 S -88.1 138.4 NA NA NA
GLU H:56 H:56 52.0 0.274 S -90.1 130.8 NA NA NA
GLU I:56 I:56 73.0 0.384 S -82.9 152.1 NA NA NA
GLU J:56 J:56 60.0 0.316 S -92.3 138.1 NA NA NA
GLU K:56 K:56 69.0 0.363 S -125.0 134.5 NA NA NA
GLU L:56 L:56 62.0 0.326 S -83.0 156.6 NA NA NA
GLU M:56 M:56 69.0 0.363 S -88.6 138.4 NA NA NA
GLU N:56 N:56 70.0 0.368 S -87.9 145.2 NA NA NA
GLU O:56 O:56 69.0 0.363 S -77.1 148.0 NA NA NA
GLU P:56 P:56 70.0 0.368 S -52.4 136.4 NA NA NA
GLU Q:56 Q:56 81.0 0.426 S -75.5 149.6 81.0 0.426 0.0 HOH
7.828
O
O
GLU R:56 R:56 74.0 0.389 S -88.1 151.9 74.0 0.389 0.0 HOH
4.919
O
O
1b50 1 P10147 98.55 1e-45 NMR
1999-07-22 GLU A:55 A:55 39.0 0.205 -62.2 132.9 39.0 0.205 0.0
GLU B:55 B:55 39.0 0.205 -62.1 132.9 39.0 0.205 0.0
1b53 1 P10147 98.55 1e-45 NMR
1999-07-22 GLU A:55 A:55 38.0 0.2 -61.1 147.0 38.0 0.2 0.0
GLU B:55 B:55 37.0 0.195 -61.2 147.0 37.0 0.195 0.0
4ra8 1 P10147 98.55 1e-45 X-RAY
2014-09-24 GLU A:56 A:56 86.0 0.453 S -72.5 142.6 86.0 0.453 0.0 HOH
7.091
O
O
GLU B:56 B:56 67.0 0.353 S -82.8 139.0 NA NA NA
GLU C:56 C:56 48.0 0.253 S -99.7 148.5 NA NA NA
GLU D:56 D:56 74.0 0.389 S -71.9 143.2 NA NA NA
GLU E:56 E:56 70.0 0.368 S -62.6 136.9 NA NA NA
7f1t 1 P10147,P51681,P00268 98.55 3e-43 X-RAY
2021-07-14 GLU A:55 A:-41 80.0 0.421 S -76.6 143.8 80.0 0.421 0.0
7f1q 1 P10147,P51681 98.55 8e-43 EM
2021-07-14 GLU A:55 R:55 63.0 0.332 S -67.8 165.0 63.0 0.332 0.0

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p10147-f1 1 P10147 100.0 3e-64 GLU A:78 A:78 71.0 0.374 S -81.9 134.2
af-p16619-f1 1 P16619 94.62 3e-59 GLU A:79 A:79 70.0 0.368 S -80.0 134.2