Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr17 34416092 . T A CCDS11307.1:NM_002983.2:c.205Agc>Tgc_NP_002974.1:p.69S>C Homo sapiens C-C motif chemokine ligand 3 (CCL3), mRNA.
pdb_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id
alphafold_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
4zkb 2 P10147 100.0 2e-47 X-RAY
2015-07-08 SER B:46 NA:NA DO NA DO DO DO NA NA NA
2x69 1 P10147 100.0 2e-47 X-RAY
2010-11-03 SER A:47 A:47 84.0 0.73 67.4 4.2 NA NA NA
SER B:47 B:47 84.0 0.73 76.6 11.4 84.0 0.73 0.0
SER C:47 C:47 87.0 0.757 75.4 22.0 87.0 0.757 0.0 HOH
4.584
N
O
SER D:47 D:47 83.0 0.722 98.5 14.9 NA NA NA
SER E:47 E:47 74.0 0.643 96.7 9.9 NA NA NA
3h44 2 P10147 100.0 2e-47 X-RAY
2010-04-14 SER C:47 C:18 140.0 1.0 -66.9 133.1 9.0 0.078 0.922 A:P14735:1.0
ZN
HOH
3.603
5.393
C
OG
ZN
O
SER D:47 D:18 184.0 1.0 360.0 93.4 NA NA NA
5cor 1 P10147 100.0 2e-47 X-RAY
2016-04-13 SER A:47 A:47 95.0 0.826 S 63.2 24.7 95.0 0.826 0.0 HOH
6.194
CB
O
SER B:47 B:47 81.0 0.704 69.5 18.5 NA NA NA
SER C:47 C:47 90.0 0.783 63.3 30.4 90.0 0.783 0.0 HEZ
HOH
7.496
3.033
C
OG
C5
O
SER D:47 D:47 86.0 0.748 61.1 26.4 NA NA NA
SER E:47 E:47 79.0 0.687 63.7 26.8 79.0 0.687 0.0 HEZ
HOH
7.190
7.293
C
C
O6
O
SER F:47 F:47 89.0 0.774 63.5 23.7 NA NA NA
SER G:47 G:47 93.0 0.809 65.6 27.4 93.0 0.809 0.0 HOH
4.406
O
O
SER H:47 H:47 76.0 0.661 65.8 27.7 NA NA NA
SER I:47 I:47 75.0 0.652 61.3 29.2 75.0 0.652 0.0 HOH
3.613
OG
O
SER J:47 J:47 92.0 0.8 61.4 23.4 NA NA NA
5d65 1 P10147 100.0 2e-47 X-RAY
2016-04-20 SER A:47 A:47 100.0 0.87 58.9 39.0 100.0 0.87 0.0
SER B:47 B:47 86.0 0.748 62.1 44.2 86.0 0.748 0.0 SGN
9.952
N
O4
SER C:47 C:47 99.0 0.861 S 58.2 32.5 99.0 0.861 0.0
SER D:47 D:47 95.0 0.826 54.6 41.3 95.0 0.826 0.0
SER E:47 E:47 94.0 0.817 62.0 39.6 94.0 0.817 0.0
3kbx 1 P10147 97.14 1e-46 X-RAY
2010-10-27 SER A:47 A:47 83.0 0.722 67.8 21.6 83.0 0.722 0.0
SER B:47 B:47 93.0 0.809 S 69.0 20.7 NA NA NA
SER C:47 C:47 92.0 0.8 66.5 22.2 NA NA NA
SER D:47 D:47 97.0 0.843 80.4 14.9 NA NA NA
SER E:47 E:47 89.0 0.774 79.8 13.1 NA NA NA
3fpu 2 P10147 98.55 3e-46 X-RAY
2010-01-12 SER B:47 B:47 71.0 0.617 S 76.2 15.9 71.0 0.617 0.0 HOH
2.683
OG
O
2x6g 1 P10147 98.57 3e-46 X-RAY
2010-11-03 SER A:47 A:47 87.0 0.757 69.0 26.4 NA NA NA
SER B:47 B:47 86.0 0.748 57.1 21.3 NA NA NA
SER C:47 C:47 83.0 0.722 74.7 26.2 NA NA NA
SER D:47 D:47 90.0 0.783 69.9 35.6 NA NA NA
SER E:47 E:47 90.0 0.783 67.3 25.6 NA NA NA
SER F:47 F:47 85.0 0.739 72.2 27.5 NA NA NA
SER G:47 G:47 94.0 0.817 55.9 39.8 NA NA NA
SER H:47 H:47 90.0 0.783 72.3 23.6 NA NA NA
SER I:47 I:47 90.0 0.783 74.5 11.7 NA NA NA
SER J:47 J:47 101.0 0.878 S 75.5 19.8 NA NA NA
SER K:47 K:47 86.0 0.748 77.7 14.2 NA NA NA
SER L:47 L:47 112.0 0.974 T 53.5 57.2 NA NA NA
SER M:47 M:47 95.0 0.826 58.5 27.5 NA NA NA
SER N:47 N:47 88.0 0.765 55.7 30.4 NA NA NA
SER O:47 O:47 92.0 0.8 65.6 20.4 NA NA NA
SER P:47 P:47 90.0 0.783 83.2 3.6 NA NA NA
SER Q:47 Q:47 90.0 0.783 54.8 30.8 90.0 0.783 0.0
SER R:47 R:47 105.0 0.913 S 55.3 25.3 105.0 0.913 0.0 HOH
2.579
OG
O
1b50 1 P10147 98.55 1e-45 NMR
1999-07-22 SER A:46 A:46 102.0 0.887 S 44.0 30.9 102.0 0.887 0.0
SER B:46 B:46 102.0 0.887 S 43.9 31.0 102.0 0.887 0.0
1b53 1 P10147 98.55 1e-45 NMR
1999-07-22 SER A:46 A:46 111.0 0.965 S 45.9 25.5 111.0 0.965 0.0
SER B:46 B:46 111.0 0.965 S 45.9 25.5 109.0 0.948 0.017 A:P10147:0.017
4ra8 1 P10147 98.55 1e-45 X-RAY
2014-09-24 SER A:47 A:47 79.0 0.687 66.3 26.1 79.0 0.687 0.0
SER B:47 B:47 87.0 0.757 69.0 21.9 NA NA NA
SER C:47 C:47 101.0 0.878 S 57.5 28.0 NA NA NA
SER D:47 D:47 91.0 0.791 60.4 37.5 NA NA NA
SER E:47 E:47 91.0 0.791 63.5 23.4 NA NA NA
7f1t 1 P10147,P51681,P00268 98.55 3e-43 X-RAY
2021-07-14 SER A:46 A:-50 125.0 1.0 S -59.6 -28.3 125.0 1.0 0.0
7f1q 1 P10147,P51681 98.55 8e-43 EM
2021-07-14 SER A:46 R:46 117.0 1.0 S -72.8 -18.2 117.0 1.0 0.0

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p10147-f1 1 P10147 100.0 3e-64 SER A:69 A:69 102.0 0.887 S 57.9 25.4
af-p16619-f1 1 P16619 94.62 3e-59 GLY A:70 A:70 55.0 0.733 S 75.8 10.5