Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr17 34416536 . C A CCDS11307.1:NM_002983.2:c.181Ggt>Tgt_NP_002974.1:p.61G>C Homo sapiens C-C motif chemokine ligand 3 (CCL3), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
4zkb 2 P10147 100.0 2e-47 X-RAY
 2015-07-08 GLY B:38 B:38 16.0 0.213 177.0 166.7 16.0 0.213 0.0
2x69 1 P10147 100.0 2e-47 X-RAY
 2010-11-03 GLY A:39 A:39 1.0 0.013 -153.4 150.1 NA NA NA
GLY B:39 B:39 1.0 0.013 -164.9 163.9 1.0 0.013 0.0 HOH
 4.082
 N
 O
GLY C:39 C:39 1.0 0.013 -167.3 156.8 1.0 0.013 0.0
GLY D:39 D:39 0.0 0.0 -168.9 158.5 NA NA NA
GLY E:39 E:39 1.0 0.013 -172.4 169.0 NA NA NA
3h44 2 P10147 100.0 2e-47 X-RAY
 2010-04-14 GLY C:39 NA:NA DO NA DO DO DO NA NA NA
GLY D:39 NA:NA DO NA DO DO DO NA NA NA
5cor 1 P10147 100.0 2e-47 X-RAY
 2016-04-13 GLY A:39 A:39 1.0 0.013 -163.2 145.3 1.0 0.013 0.0 HEZ
HEZ
HOH
 7.295
8.482
3.521
 O
O
N
 O1
O1
O
GLY B:39 B:39 0.0 0.0 -170.5 142.0 NA NA NA
GLY C:39 C:39 0.0 0.0 -171.6 142.2 0.0 0.0 0.0 HOH
 3.759
 N
 O
GLY D:39 D:39 0.0 0.0 -158.9 154.2 NA NA NA
GLY E:39 E:39 0.0 0.0 -168.0 144.1 0.0 0.0 0.0 HEZ
HOH
 7.539
3.436
 O
N
 O6
O
GLY F:39 F:39 1.0 0.013 -161.7 146.0 NA NA NA
GLY G:39 G:39 1.0 0.013 -163.7 140.7 1.0 0.013 0.0 HEZ
HOH
 8.610
3.723
 O
N
 C2
O
GLY H:39 H:39 0.0 0.0 -167.3 151.4 NA NA NA
GLY I:39 I:39 0.0 0.0 -173.6 148.9 0.0 0.0 0.0 HOH
 3.500
 N
 O
GLY J:39 J:39 1.0 0.013 -167.5 142.7 NA NA NA
5d65 1 P10147 100.0 2e-47 X-RAY
 2016-04-20 GLY A:39 A:39 0.0 0.0 -143.7 159.0 0.0 0.0 0.0 BGC
 7.697
 N
 O4
GLY B:39 B:39 0.0 0.0 -179.4 151.2 0.0 0.0 0.0 GLC
BGC
 5.398
6.363
 N
O
 C6
O1
GLY C:39 C:39 4.0 0.053 -168.2 147.1 4.0 0.053 0.0
GLY D:39 D:39 4.0 0.053 -178.9 155.1 4.0 0.053 0.0
GLY E:39 E:39 0.0 0.0 170.3 148.8 0.0 0.0 0.0
3kbx 1 P10147 97.14 1e-46 X-RAY
 2010-10-27 GLY A:39 A:39 4.0 0.053 -148.0 144.1 4.0 0.053 0.0 K
HOH
 8.890
3.228
 N
N
 K
O
GLY B:39 B:39 4.0 0.053 -163.2 148.8 NA NA NA
GLY C:39 C:39 3.0 0.04 -162.1 151.4 NA NA NA
GLY D:39 D:39 1.0 0.013 -169.3 156.1 NA NA NA
GLY E:39 E:39 3.0 0.04 -165.0 156.0 NA NA NA
3fpu 2 P10147 98.55 3e-46 X-RAY
 2010-01-12 GLY B:39 B:39 7.0 0.093 -166.7 136.3 7.0 0.093 0.0 HOH
 3.561
 N
 O
2x6g 1 P10147 98.57 3e-46 X-RAY
 2010-11-03 GLY A:39 A:39 2.0 0.027 -174.2 140.5 NA NA NA
GLY B:39 B:39 6.0 0.08 -159.5 145.9 NA NA NA
GLY C:39 C:39 5.0 0.067 -170.8 139.5 NA NA NA
GLY D:39 D:39 4.0 0.053 -159.1 143.4 NA NA NA
GLY E:39 E:39 1.0 0.013 -164.9 143.1 NA NA NA
GLY F:39 F:39 1.0 0.013 -160.5 155.8 NA NA NA
GLY G:39 G:39 5.0 0.067 -167.3 149.7 NA NA NA
GLY H:39 H:39 3.0 0.04 -168.7 139.1 NA NA NA
GLY I:39 I:39 5.0 0.067 -169.2 153.2 NA NA NA
GLY J:39 J:39 0.0 0.0 -159.7 148.8 NA NA NA
GLY K:39 K:39 4.0 0.053 -171.0 142.2 NA NA NA
GLY L:39 L:39 3.0 0.04 -164.6 139.1 NA NA NA
GLY M:39 M:39 2.0 0.027 -154.6 150.7 NA NA NA
GLY N:39 N:39 3.0 0.04 -166.5 150.2 NA NA NA
GLY O:39 O:39 4.0 0.053 -152.9 142.1 NA NA NA
GLY P:39 P:39 0.0 0.0 -160.3 160.1 NA NA NA
GLY Q:39 Q:39 5.0 0.067 -159.7 142.7 5.0 0.067 0.0 HOH
 2.892
 N
 O
GLY R:39 R:39 1.0 0.013 -151.8 147.4 1.0 0.013 0.0 HOH
 3.339
 N
 O
1b50 1 P10147 98.55 1e-45 NMR
 1999-07-22 GLY A:38 A:38 0.0 0.0 S -50.3 176.4 0.0 0.0 0.0
GLY B:38 B:38 0.0 0.0 S -50.3 176.4 0.0 0.0 0.0
1b53 1 P10147 98.55 1e-45 NMR
 1999-07-22 GLY A:38 A:38 9.0 0.12 S -167.9 -171.2 9.0 0.12 0.0
GLY B:38 B:38 9.0 0.12 S -167.9 -171.2 9.0 0.12 0.0
4ra8 1 P10147 98.55 1e-45 X-RAY
 2014-09-24 GLY A:39 A:39 5.0 0.067 -152.4 141.0 5.0 0.067 0.0 HOH
 3.450
 N
 O
GLY B:39 B:39 0.0 0.0 -174.2 158.5 NA NA NA
GLY C:39 C:39 1.0 0.013 -156.5 150.2 NA NA NA
GLY D:39 D:39 0.0 0.0 -174.8 147.8 NA NA NA
GLY E:39 E:39 1.0 0.013 -172.7 152.7 NA NA NA
7f1t 1 P10147,P51681,P00268 98.55 3e-43 X-RAY
 2021-07-14 GLY A:38 A:-58 3.0 0.04 -159.4 161.2 3.0 0.04 0.0
7f1q 1 P10147,P51681 98.55 8e-43 EM
 2021-07-14 GLY A:38 R:38 3.0 0.04 -168.3 164.0 3.0 0.04 0.0

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p10147-f1 1 P10147 100.0 3e-64 GLY A:61 A:61 5.0 0.067 -158.9 145.5
af-p16619-f1 1 P16619 94.62 3e-59 SER A:62 A:62 5.0 0.043 -151.4 143.7