Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr17 34416563 . C A CCDS11307.1:NM_002983.2:c.154Gag>Tag_NP_002974.1:p.52E>* Homo sapiens C-C motif chemokine ligand 3 (CCL3), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
4zkb 2 P10147 100.0 2e-47 X-RAY
 2015-07-08 GLU B:29 B:29 79.0 NA -126.9 102.7 79.0 NA NA
2x69 1 P10147 100.0 2e-47 X-RAY
 2010-11-03 GLU A:30 A:30 127.0 0.668 E -85.1 141.9 NA NA NA
GLU B:30 B:30 133.0 0.7 E -100.4 145.1 133.0 0.7 0.0 HOH
 5.516
 C
 O
GLU C:30 C:30 115.0 0.605 E -97.6 137.2 115.0 0.605 0.0
GLU D:30 D:30 126.0 0.663 E -109.1 137.1 NA NA NA
GLU E:30 E:30 136.0 0.716 E -91.0 155.2 NA NA NA
3h44 2 P10147 100.0 2e-47 X-RAY
 2010-04-14 GLU C:30 NA:NA DO NA DO DO DO NA NA NA
GLU D:30 NA:NA DO NA DO DO DO NA NA NA
5cor 1 P10147 100.0 2e-47 X-RAY
 2016-04-13 GLU A:30 A:30 121.0 0.637 E -82.2 129.3 121.0 0.637 0.0 HEZ
HEZ
HOH
 2.975
4.098
2.995
 N
O
O
 O1
O1
O
GLU B:30 B:30 116.0 0.611 E -65.2 153.1 NA NA NA
GLU C:30 C:30 113.0 0.595 E -72.5 150.6 95.0 0.5 0.095 A:P10147:0.095
 HOH
 4.337
 O
 O
GLU D:30 D:30 117.0 0.616 E -80.6 131.9 NA NA NA
GLU E:30 E:30 117.0 0.616 E -77.0 138.0 73.0 0.384 0.232 C:P10147:0.232
 HEZ
HOH
 3.393
3.104
 CB
OE2
 O6
O
GLU F:30 F:30 125.0 0.658 E -86.3 129.0 NA NA NA
GLU G:30 G:30 122.0 0.642 E -91.0 131.0 120.0 0.632 0.01 E:P10147:0.011
 HEZ
HOH
 3.661
3.144
 OE1
N
 C5
O
GLU H:30 H:30 115.0 0.605 E -81.7 131.9 NA NA NA
GLU I:30 I:30 115.0 0.605 E -80.7 129.4 78.0 0.411 0.194 G:P10147:0.195
 HOH
 2.487
 OE2
 O
GLU J:30 J:30 121.0 0.637 E -84.8 139.3 NA NA NA
5d65 1 P10147 100.0 2e-47 X-RAY
 2016-04-20 GLU A:30 A:30 133.0 0.7 E -92.0 130.6 45.0 0.237 0.463 C:P10147:0.168
B:P10147:0.305
 BGC
 9.583
 OE2
 O4
GLU B:30 B:30 132.0 0.695 E -76.1 139.3 75.0 0.395 0.3 D:P10147:0.179
E:P10147:0.158
 BGC
GLC
BGC
 7.499
4.072
4.372
 O
OE2
OE2
 O1
C6
O1
GLU C:30 C:30 129.0 0.679 E -72.3 157.8 86.0 0.453 0.226 A:P10147:0.226
GLU D:30 D:30 151.0 0.795 E -85.1 137.7 78.0 0.411 0.384 C:P10147:0.253
B:P10147:0.158
GLU E:30 E:30 141.0 0.742 E -120.2 134.7 141.0 0.742 0.0
3kbx 1 P10147 97.14 1e-46 X-RAY
 2010-10-27 GLU A:30 A:30 122.0 0.642 E -98.1 143.4 122.0 0.642 0.0 HOH
 4.394
 O
 O
GLU B:30 B:30 122.0 0.642 E -100.0 136.8 NA NA NA
GLU C:30 C:30 126.0 0.663 E -100.7 133.8 NA NA NA
GLU D:30 D:30 116.0 0.611 E -105.3 145.9 NA NA NA
GLU E:30 E:30 119.0 0.626 E -88.3 159.7 NA NA NA
3fpu 2 P10147 98.55 3e-46 X-RAY
 2010-01-12 GLU B:30 B:30 137.0 0.721 E -101.2 134.1 124.0 0.653 0.068 A:P0C8E7:0.068
 HOH
 2.441
 O
 O
2x6g 1 P10147 98.57 3e-46 X-RAY
 2010-11-03 GLU A:30 A:30 134.0 0.705 E -87.1 125.5 NA NA NA
GLU B:30 B:30 150.0 0.789 E -78.6 145.8 NA NA NA
GLU C:30 C:30 139.0 0.732 E -87.0 132.7 NA NA NA
GLU D:30 D:30 141.0 0.742 E -94.3 138.3 NA NA NA
GLU E:30 E:30 111.0 0.584 E -83.4 144.4 NA NA NA
GLU F:30 F:30 118.0 0.621 E -80.8 137.5 NA NA NA
GLU G:30 G:30 145.0 0.763 E -98.2 133.9 NA NA NA
GLU H:30 H:30 128.0 0.674 E -71.5 149.3 NA NA NA
GLU I:30 I:30 145.0 0.763 E -89.4 146.7 NA NA NA
GLU J:30 J:30 129.0 0.679 E -76.2 132.9 NA NA NA
GLU K:30 K:30 146.0 0.768 E -93.2 135.1 NA NA NA
GLU L:30 L:30 146.0 0.768 E -103.6 138.4 NA NA NA
GLU M:30 M:30 141.0 0.742 E -98.1 147.6 NA NA NA
GLU N:30 N:30 124.0 0.653 E -99.4 136.4 NA NA NA
GLU O:30 O:30 132.0 0.695 E -56.9 140.9 NA NA NA
GLU P:30 P:30 121.0 0.637 E -69.0 147.4 NA NA NA
GLU Q:30 Q:30 124.0 0.653 E -93.6 137.8 124.0 0.653 0.0 HOH
 4.155
 O
 O
GLU R:30 R:30 140.0 0.737 E -86.8 142.2 140.0 0.737 0.0 HOH
 3.292
 OE1
 O
1b50 1 P10147 98.55 1e-45 NMR
 1999-07-22 GLU A:29 A:29 79.0 0.416 -100.8 55.9 79.0 0.416 0.0
GLU B:29 B:29 79.0 0.416 -100.8 55.9 79.0 0.416 0.0
1b53 1 P10147 98.55 1e-45 NMR
 1999-07-22 GLU A:29 A:29 99.0 0.521 -164.2 39.0 99.0 0.521 0.0
GLU B:29 B:29 100.0 0.526 -164.2 39.0 100.0 0.526 0.0
4ra8 1 P10147 98.55 1e-45 X-RAY
 2014-09-24 GLU A:30 A:30 151.0 0.795 E -82.8 137.1 151.0 0.795 0.0 HOH
 2.618
 OE1
 O
GLU B:30 B:30 130.0 0.684 E -92.7 134.8 NA NA NA
GLU C:30 C:30 125.0 0.658 E -84.9 140.5 NA NA NA
GLU D:30 D:30 126.0 0.663 E -84.6 136.1 NA NA NA
GLU E:30 E:30 139.0 0.732 E -92.7 133.0 NA NA NA
7f1t 1 P10147,P51681,P00268 98.55 3e-43 X-RAY
 2021-07-14 GLU A:29 A:-67 56.0 0.295 E -94.1 134.7 56.0 0.295 0.0
7f1q 1 P10147,P51681 98.55 8e-43 EM
 2021-07-14 GLU A:29 R:29 33.0 0.174 E -101.4 130.1 33.0 0.174 0.0

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p10147-f1 1 P10147 100.0 3e-64 GLU A:52 A:52 142.0 0.747 E -81.7 139.2
af-p16619-f1 1 P16619 94.62 3e-59 GLU A:53 A:53 144.0 0.758 E -87.4 139.8