Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr17 34416569 . A C CCDS11307.1:NM_002983.2:c.148Tac>Gac_NP_002974.1:p.50Y>D Homo sapiens C-C motif chemokine ligand 3 (CCL3), mRNA.
pdb_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id
alphafold_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
4zkb 2 P10147 100.0 2e-47 X-RAY
2015-07-08 TYR B:27 B:27 69.0 NA B -140.3 -171.4 69.0 NA NA
2x69 1 P10147 100.0 2e-47 X-RAY
2010-11-03 TYR A:28 A:28 51.0 0.222 E -150.5 151.3 NA NA NA
TYR B:28 B:28 39.0 0.17 E -153.9 160.4 39.0 0.17 0.0
TYR C:28 C:28 47.0 0.204 E -158.1 150.4 47.0 0.204 0.0
TYR D:28 D:28 41.0 0.178 E -157.7 158.6 NA NA NA
TYR E:28 E:28 40.0 0.174 E -147.4 173.8 NA NA NA
3h44 2 P10147 100.0 2e-47 X-RAY
2010-04-14 TYR C:28 NA:NA DO NA DO DO DO NA NA NA
TYR D:28 NA:NA DO NA DO DO DO NA NA NA
5cor 1 P10147 100.0 2e-47 X-RAY
2016-04-13 TYR A:28 A:28 47.0 0.204 E -142.7 155.8 47.0 0.204 0.0 HEZ
HEZ
HOH
3.220
6.391
7.721
OH
O
CB
C2
C1
O
TYR B:28 B:28 48.0 0.209 E -134.4 152.8 NA NA NA
TYR C:28 C:28 49.0 0.213 E -129.9 154.9 16.0 0.07 0.143 A:P10147:0.143
HEZ
HOH
7.475
5.726
CB
O
O1
O
TYR D:28 D:28 41.0 0.178 E -138.6 158.0 NA NA NA
TYR E:28 E:28 44.0 0.191 E -142.8 156.6 17.0 0.074 0.117 C:P10147:0.117
HEZ
HOH
3.185
7.000
OH
CE2
C3
O
TYR F:28 F:28 46.0 0.2 E -145.1 153.1 NA NA NA
TYR G:28 G:28 42.0 0.183 E -137.9 156.9 11.0 0.048 0.135 E:P10147:0.135
HEZ
HOH
3.433
4.280
OH
CE2
O6
O
TYR H:28 H:28 41.0 0.178 E -135.1 159.1 NA NA NA
TYR I:28 I:28 43.0 0.187 E -133.8 157.3 20.0 0.087 0.1 G:P10147:0.1
HOH
6.961
O
O
TYR J:28 J:28 45.0 0.196 E -137.3 152.9 NA NA NA
5d65 1 P10147 100.0 2e-47 X-RAY
2016-04-20 TYR A:28 A:28 47.0 0.204 E -147.7 148.7 15.0 0.065 0.139 B:P10147:0.139
BGC
8.380
N
O4
TYR B:28 B:28 49.0 0.213 E -138.6 153.7 17.0 0.074 0.139 E:P10147:0.139
IDS
SGN
BGC
9.197
7.850
6.708
N
N
CE2
O6A
O2S
O2
TYR C:28 C:28 34.0 0.148 E -156.4 162.8 34.0 0.148 0.0 BGC
8.393
CB
O6
TYR D:28 D:28 41.0 0.178 E -143.6 150.9 15.0 0.065 0.113 C:P10147:0.113
TYR E:28 E:28 46.0 0.2 E -137.1 150.4 46.0 0.2 0.0
3kbx 1 P10147 97.14 1e-46 X-RAY
2010-10-27 TYR A:28 A:28 40.0 0.174 E -165.6 159.9 40.0 0.174 0.0 HOH
9.855
C
O
TYR B:28 B:28 40.0 0.174 E -161.9 156.7 NA NA NA
TYR C:28 C:28 43.0 0.187 E -156.9 156.5 NA NA NA
TYR D:28 D:28 42.0 0.183 E -160.1 162.9 NA NA NA
TYR E:28 E:28 43.0 0.187 E -163.7 179.4 NA NA NA
3fpu 2 P10147 98.55 3e-46 X-RAY
2010-01-12 TYR B:28 B:28 70.0 0.304 E -145.9 158.8 70.0 0.304 0.0 HOH
2.831
O
O
2x6g 1 P10147 98.57 3e-46 X-RAY
2010-11-03 TYR A:28 A:28 57.0 0.248 E -148.4 168.7 NA NA NA
TYR B:28 B:28 41.0 0.178 E -140.3 156.4 NA NA NA
TYR C:28 C:28 47.0 0.204 E -138.4 154.2 NA NA NA
TYR D:28 D:28 52.0 0.226 E -143.9 168.4 NA NA NA
TYR E:28 E:28 63.0 0.274 E -144.9 173.8 NA NA NA
TYR F:28 F:28 48.0 0.209 E -148.0 157.6 NA NA NA
TYR G:28 G:28 40.0 0.174 E -142.7 163.4 NA NA NA
TYR H:28 H:28 61.0 0.265 E -146.0 157.1 NA NA NA
TYR I:28 I:28 34.0 0.148 E -141.8 157.5 NA NA NA
TYR J:28 J:28 58.0 0.252 E -126.0 161.7 NA NA NA
TYR K:28 K:28 75.0 0.326 E -149.2 166.0 NA NA NA
TYR L:28 L:28 68.0 0.296 E -139.2 164.5 NA NA NA
TYR M:28 M:28 54.0 0.235 E -139.9 148.5 NA NA NA
TYR N:28 N:28 52.0 0.226 E -160.3 160.9 NA NA NA
TYR O:28 O:28 73.0 0.317 E -129.6 160.5 NA NA NA
TYR P:28 P:28 83.0 0.361 E -144.8 154.6 NA NA NA
TYR Q:28 Q:28 56.0 0.243 E -134.8 164.5 56.0 0.243 0.0 HOH
7.295
OH
O
TYR R:28 R:28 69.0 0.3 E -146.1 163.2 69.0 0.3 0.0 HOH
7.841
CE2
O
1b50 1 P10147 98.55 1e-45 NMR
1999-07-22 TYR A:27 A:27 49.0 0.213 E 175.6 175.1 49.0 0.213 0.0
TYR B:27 B:27 47.0 0.204 E 175.7 175.0 47.0 0.204 0.0
1b53 1 P10147 98.55 1e-45 NMR
1999-07-22 TYR A:27 A:27 36.0 0.157 178.8 -43.5 36.0 0.157 0.0
TYR B:27 B:27 36.0 0.157 178.8 -43.5 36.0 0.157 0.0
4ra8 1 P10147 98.55 1e-45 X-RAY
2014-09-24 TYR A:28 A:28 52.0 0.226 E -152.3 156.8 52.0 0.226 0.0 HOH
3.050
OH
O
TYR B:28 B:28 42.0 0.183 E -137.8 157.9 NA NA NA
TYR C:28 C:28 49.0 0.213 E -155.5 157.8 NA NA NA
TYR D:28 D:28 55.0 0.239 E -150.0 171.0 NA NA NA
TYR E:28 E:28 44.0 0.191 E -141.0 157.9 NA NA NA
7f1t 1 P10147,P51681,P00268 98.55 3e-43 X-RAY
2021-07-14 TYR A:27 A:-69 36.0 0.157 E -147.5 163.9 36.0 0.157 0.0
7f1q 1 P10147,P51681 98.55 8e-43 EM
2021-07-14 TYR A:27 R:27 69.0 0.3 E -123.6 144.1 69.0 0.3 0.0

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p10147-f1 1 P10147 100.0 3e-64 TYR A:50 A:50 47.0 0.204 E -140.5 157.3
af-p16619-f1 1 P16619 94.62 3e-59 TYR A:51 A:51 45.0 0.196 E -139.9 157.6