Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr17 34416599 . G A CCDS11307.1:NM_002983.2:c.118Cgg>Tgg_NP_002974.1:p.40R>W Homo sapiens C-C motif chemokine ligand 3 (CCL3), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
4zkb 2 P10147 100.0 2e-47 X-RAY
 2015-07-08 ARG B:17 B:17 214.0 0.951 S -90.3 110.0 79.0 0.351 0.6 A:Q2F862:0.6
2x69 1 P10147 100.0 2e-47 X-RAY
 2010-11-03 ARG A:18 A:18 136.0 0.604 S -117.6 142.5 NA NA NA
ARG B:18 B:18 191.0 0.849 S -109.9 124.7 191.0 0.849 0.0 HOH
 4.411
 N
 O
ARG C:18 C:18 157.0 0.698 S -129.9 136.8 157.0 0.698 0.0
ARG D:18 D:18 198.0 0.88 S -112.3 140.8 NA NA NA
ARG E:18 E:18 208.0 0.924 S -78.4 121.9 NA NA NA
3h44 2 P10147 100.0 2e-47 X-RAY
 2010-04-14 ARG C:18 NA:NA DO NA DO DO DO NA NA NA
ARG D:18 NA:NA DO NA DO DO DO NA NA NA
5cor 1 P10147 100.0 2e-47 X-RAY
 2016-04-13 ARG A:18 A:18 189.0 0.84 S -120.4 151.7 103.0 0.458 0.382 C:P10147:0.382
 HOH
 3.318
 NH2
 O
ARG B:18 B:18 192.0 0.853 S -126.3 153.6 NA NA NA
ARG C:18 C:18 191.0 0.849 S -110.0 138.5 96.0 0.427 0.422 E:P10147:0.422
 HEZ
HOH
 3.254
4.489
 NH1
NH2
 O1
O
ARG D:18 D:18 210.0 0.933 S -105.1 147.8 NA NA NA
ARG E:18 E:18 175.0 0.778 S -108.9 146.1 175.0 0.778 0.0 HEZ
HEZ
HOH
 9.027
2.816
4.158
 NH2
NE
NH2
 O1
O1
O
ARG F:18 F:18 182.0 0.809 S -108.7 142.7 NA NA NA
ARG G:18 G:18 189.0 0.84 S -107.3 155.0 102.0 0.453 0.387 I:P10147:0.387
 HOH
 3.151
 NH2
 O
ARG H:18 H:18 192.0 0.853 S -114.8 144.0 NA NA NA
ARG I:18 I:18 183.0 0.813 S -116.1 139.7 183.0 0.813 0.0 ACT
HOH
 9.748
4.254
 C
NE
 OXT
O
ARG J:18 J:18 186.0 0.827 S -106.1 144.4 NA NA NA
5d65 1 P10147 100.0 2e-47 X-RAY
 2016-04-20 ARG A:18 A:18 205.0 0.911 S -102.6 150.3 205.0 0.911 0.0 BGC
 8.661
 C
 O3
ARG B:18 B:18 194.0 0.862 S -123.9 138.7 97.0 0.431 0.431 A:P10147:0.431
 IDS
BGC
BGC
BGC
 9.930
6.267
8.716
5.905
 C
NH1
NH1
NH2
 O1S
O4
O2
O3
ARG C:18 C:18 197.0 0.876 S -93.7 157.5 186.0 0.827 0.049 D:P10147:0.049
ARG D:18 D:18 102.0 0.453 S -77.9 173.5 102.0 0.453 0.0 BGC
 2.589
 NH1
 O6
ARG E:18 E:18 179.0 0.796 S -105.4 139.2 171.0 0.76 0.036 B:P10147:0.036
 GLC
BGC
 3.600
4.135
 CG
CD
 O6
C6
3kbx 1 P10147 97.14 1e-46 X-RAY
 2010-10-27 ARG A:18 A:18 194.0 0.862 S -124.9 152.4 194.0 0.862 0.0 HOH
 5.844
 O
 O
ARG B:18 B:18 178.0 0.791 S -97.8 157.2 NA NA NA
ARG C:18 C:18 176.0 0.782 S -101.0 135.4 NA NA NA
ARG D:18 D:18 185.0 0.822 S -106.8 138.3 NA NA NA
ARG E:18 E:18 197.0 0.876 S -61.4 120.6 NA NA NA
3fpu 2 P10147 98.55 3e-46 X-RAY
 2010-01-12 ARG B:18 B:18 206.0 0.916 S -127.5 161.0 94.0 0.418 0.498 A:P0C8E7:0.498
 HOH
 4.253
 C
 O
2x6g 1 P10147 98.57 3e-46 X-RAY
 2010-11-03 ARG A:18 A:18 174.0 0.773 S -99.6 145.5 NA NA NA
ARG B:18 B:18 180.0 0.8 S -134.3 123.2 NA NA NA
ARG C:18 C:18 200.0 0.889 S -83.5 128.5 NA NA NA
ARG D:18 D:18 195.0 0.867 S -128.3 136.4 NA NA NA
ARG E:18 E:18 188.0 0.836 S -114.9 136.7 NA NA NA
ARG F:18 F:18 196.0 0.871 S -90.8 123.3 NA NA NA
ARG G:18 G:18 201.0 0.893 S -122.0 121.4 NA NA NA
ARG H:18 H:18 201.0 0.893 S -106.9 134.1 NA NA NA
ARG I:18 I:18 189.0 0.84 S -96.8 153.7 NA NA NA
ARG J:18 J:18 193.0 0.858 S -92.5 132.3 NA NA NA
ARG K:18 K:18 202.0 0.898 S -107.0 147.7 NA NA NA
ARG L:18 L:18 178.0 0.791 S -131.9 165.6 NA NA NA
ARG M:18 M:18 209.0 0.929 S -99.2 140.0 NA NA NA
ARG N:18 N:18 183.0 0.813 S -132.6 130.1 NA NA NA
ARG O:18 O:18 185.0 0.822 S -88.0 121.0 NA NA NA
ARG P:18 P:18 139.0 0.618 S -95.1 147.6 NA NA NA
ARG Q:18 NA:NA DO NA DO DO DO NA NA NA
ARG R:18 R:18 154.0 0.684 S -107.4 131.0 154.0 0.684 0.0 HOH
 5.106
 NE
 O
1b50 1 P10147 98.55 1e-45 NMR
 1999-07-22 ARG A:17 A:17 216.0 0.96 S -77.9 126.5 216.0 0.96 0.0
ARG B:17 B:17 215.0 0.956 S -77.9 126.6 215.0 0.956 0.0
1b53 1 P10147 98.55 1e-45 NMR
 1999-07-22 ARG A:17 A:17 198.0 0.88 S -82.5 159.4 198.0 0.88 0.0
ARG B:17 B:17 198.0 0.88 S -82.5 159.3 198.0 0.88 0.0
4ra8 1 P10147 98.55 1e-45 X-RAY
 2014-09-24 ARG A:18 A:18 190.0 0.844 S -127.0 141.1 190.0 0.844 0.0
ARG B:18 B:18 196.0 0.871 S -137.1 132.9 NA NA NA
ARG C:18 C:18 128.0 0.569 S -138.2 177.9 NA NA NA
ARG D:18 D:18 216.0 0.96 S -77.5 142.2 NA NA NA
ARG E:18 E:18 208.0 0.924 S -97.5 130.6 NA NA NA
7f1t 1 P10147,P51681,P00268 98.55 3e-43 X-RAY
 2021-07-14 ARG A:17 A:-79 185.0 0.822 S -143.5 145.4 185.0 0.822 0.0
7f1q 1 P10147,P51681 98.55 8e-43 EM
 2021-07-14 ARG A:17 R:17 66.0 NA S -118.8 175.2 66.0 NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p10147-f1 1 P10147 100.0 3e-64 ARG A:40 A:40 199.0 0.884 S -127.4 138.0
af-p16619-f1 1 P16619 94.62 3e-59 ARG A:41 A:41 198.0 0.88 S -127.2 137.1