Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr17 34523215 . C A CCDS32626.1:NM_001001437.3:c.173tGc>tTc_NP_001001437.2:p.58C>F Homo sapiens C-C motif chemokine ligand 3 like 3 (CCL3L3), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
2x69 1 P10147 95.71 5e-45 X-RAY
 2010-11-03 CYS A:35 A:35 14.0 0.104 S -62.7 157.4 NA NA NA
CYS B:35 B:35 13.0 0.096 S -54.3 163.2 11.0 0.081 0.015 C:P10147:0.015
 HOH
 3.580
 CB
 O
CYS C:35 C:35 13.0 0.096 S -73.5 144.6 11.0 0.081 0.015 B:P10147:0.015
 HOH
 9.046
 SG
 O
CYS D:35 D:35 15.0 0.111 S -74.5 142.6 NA NA NA
CYS E:35 E:35 15.0 0.111 S -69.2 153.3 NA NA NA
3h44 2 P10147 95.71 5e-45 X-RAY
 2010-04-14 CYS C:35 NA:NA DO NA DO DO DO NA NA NA
CYS D:35 NA:NA DO NA DO DO DO NA NA NA
5cor 1 P10147 95.71 5e-45 X-RAY
 2016-04-13 CYS A:35 A:35 16.0 0.119 S -68.0 147.5 16.0 0.119 0.0 HOH
 3.246
 CB
 O
CYS B:35 B:35 14.0 0.104 S -66.9 148.8 NA NA NA
CYS C:35 C:35 16.0 0.119 S -63.6 144.6 12.0 0.089 0.03 A:P10147:0.03
 HOH
 3.517
 CB
 O
CYS D:35 D:35 17.0 0.126 S -67.5 147.9 NA NA NA
CYS E:35 E:35 15.0 0.111 S -69.7 153.5 15.0 0.111 0.0 HOH
 2.831
 O
 O
CYS F:35 F:35 16.0 0.119 S -65.1 145.4 NA NA NA
CYS G:35 G:35 17.0 0.126 S -63.8 145.8 17.0 0.126 0.0 HOH
 3.424
 CB
 O
CYS H:35 H:35 15.0 0.111 S -65.5 147.7 NA NA NA
CYS I:35 I:35 16.0 0.119 S -67.8 150.7 16.0 0.119 0.0 HOH
 3.378
 CB
 O
CYS J:35 J:35 15.0 0.111 S -64.3 148.1 NA NA NA
5d65 1 P10147 95.71 5e-45 X-RAY
 2016-04-20 CYS A:35 A:35 16.0 0.119 S -62.6 155.8 16.0 0.119 0.0 BGC
 6.939
 O
 O2
CYS B:35 B:35 14.0 0.104 S -63.6 147.8 12.0 0.089 0.015 C:P10147:0.015
 CL
BGC
GLC
 3.880
7.165
3.507
 C
SG
O
 CL
O1
O1
CYS C:35 C:35 13.0 0.096 S -65.9 146.3 10.0 0.074 0.022 B:P10147:0.022
 CL
 3.988
 CA
 CL
CYS D:35 D:35 15.0 0.111 S -62.9 145.5 12.0 0.089 0.022 E:P10147:0.022
 BGC
CL
 8.328
3.890
 N
CA
 O4
CL
CYS E:35 E:35 15.0 0.111 S -62.8 144.4 12.0 0.089 0.022 D:P10147:0.022
 CL
 4.075
 CA
 CL
4zkb 2 P10147 97.06 1e-44 X-RAY
 2015-07-08 CYS B:34 B:34 39.0 0.289 69.3 171.0 39.0 0.289 0.0
3kbx 1 P10147 92.86 3e-44 X-RAY
 2010-10-27 CYS A:35 A:35 12.0 0.089 S -75.4 137.1 10.0 0.074 0.015 A:P10147:0.015
 K
HOH
 3.092
2.936
 O
O
 K
O
CYS B:35 B:35 15.0 0.111 S -60.6 144.5 NA NA NA
CYS C:35 C:35 13.0 0.096 S -68.7 155.9 NA NA NA
CYS D:35 D:35 15.0 0.111 S -63.7 158.4 NA NA NA
CYS E:35 E:35 17.0 0.126 S -67.0 151.9 NA NA NA
3fpu 2 P10147 95.59 5e-44 X-RAY
 2010-01-12 CYS B:35 B:35 15.0 0.111 S -63.8 156.5 12.0 0.089 0.022 A:P0C8E7:0.022
 HOH
 2.907
 O
 O
2x6g 1 P10147 94.29 8e-44 X-RAY
 2010-11-03 CYS A:35 A:35 16.0 0.119 S -60.3 148.6 NA NA NA
CYS B:35 B:35 16.0 0.119 S -59.3 152.6 NA NA NA
CYS C:35 C:35 17.0 0.126 S -61.0 155.8 NA NA NA
CYS D:35 D:35 15.0 0.111 S -55.2 151.4 NA NA NA
CYS E:35 E:35 14.0 0.104 S -68.3 144.3 NA NA NA
CYS F:35 F:35 16.0 0.119 S -63.1 153.9 NA NA NA
CYS G:35 G:35 16.0 0.119 S -66.6 154.2 NA NA NA
CYS H:35 H:35 15.0 0.111 S -63.8 147.8 NA NA NA
CYS I:35 I:35 16.0 0.119 S -65.8 154.2 NA NA NA
CYS J:35 J:35 15.0 0.111 S -62.3 157.3 NA NA NA
CYS K:35 K:35 11.0 0.081 S -48.3 153.0 NA NA NA
CYS L:35 L:35 15.0 0.111 S -75.6 146.1 NA NA NA
CYS M:35 M:35 15.0 0.111 S -62.0 160.1 NA NA NA
CYS N:35 N:35 16.0 0.119 S -66.2 157.3 NA NA NA
CYS O:35 O:35 17.0 0.126 S -69.9 159.1 NA NA NA
CYS P:35 P:35 15.0 0.111 S -61.8 156.2 NA NA NA
CYS Q:35 Q:35 20.0 0.148 S -54.4 -179.4 16.0 0.119 0.029 R:P10147:0.03
 HOH
 3.861
 CB
 O
CYS R:35 R:35 14.0 0.104 S -65.8 140.1 10.0 0.074 0.03 Q:P10147:0.03
 HOH
 3.006
 O
 O
1b50 1 P10147 95.59 2e-43 NMR
 1999-07-22 CYS A:34 A:34 24.0 0.178 T 177.8 52.7 23.0 0.17 0.008 B:P10147:0.007
CYS B:34 B:34 24.0 0.178 T 177.8 52.7 23.0 0.17 0.008 A:P10147:0.007
1b53 1 P10147 95.59 2e-43 NMR
 1999-07-22 CYS A:34 A:34 24.0 0.178 S -123.1 120.5 7.0 0.052 0.126 B:P10147:0.126
CYS B:34 B:34 24.0 0.178 S -123.1 120.5 9.0 0.067 0.111 A:P10147:0.111
4ra8 1 P10147 94.2 2e-43 X-RAY
 2014-09-24 CYS A:35 A:35 13.0 0.096 S -63.6 152.9 9.0 0.067 0.029 A:P10147:0.03
 HOH
 2.914
 O
 O
CYS B:35 B:35 17.0 0.126 S -66.5 153.7 NA NA NA
CYS C:35 C:35 14.0 0.104 S -68.9 149.6 NA NA NA
CYS D:35 D:35 12.0 0.089 S -64.3 145.2 NA NA NA
CYS E:35 E:35 15.0 0.111 S -70.3 149.3 NA NA NA
7f1q 1 P10147,P51681 95.59 2e-40 EM
 2021-07-14 CYS A:34 R:34 2.0 0.015 S -65.5 151.8 2.0 0.015 0.0
7f1t 1 P10147,P51681,P00268 95.59 7e-40 X-RAY
 2021-07-14 CYS A:34 A:-62 2.0 0.015 S -61.8 145.0 2.0 0.015 0.0

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p16619-f1 1 P16619 100.0 6e-65 CYS A:58 A:58 16.0 0.119 S -72.9 145.8
af-p10147-f1 1 P10147 94.62 3e-59 CYS A:57 A:57 17.0 0.126 S -71.0 145.5