Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr17 34624269 . A C CCDS11310.1:NM_021006.4:c.272cTg>cGg_NP_066286.1:p.91L>R Homo sapiens chemokine (C-C motif) ligand 3-like 1 (CCL3L1), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
2x69 1 P10147 95.71 5e-45 X-RAY
 2010-11-03 LEU A:68 A:68 142.0 0.835 T -74.5 48.4 NA NA NA
LEU B:68 B:68 144.0 0.847 T -90.0 46.6 144.0 0.847 0.0
LEU C:68 C:68 155.0 0.912 H -62.8 -20.6 155.0 0.912 0.0 HOH
 5.074
 O
 O
LEU D:68 D:68 151.0 0.888 T -79.5 23.2 NA NA NA
LEU E:68 E:68 141.0 0.829 H -49.3 -59.7 NA NA NA
3h44 2 P10147 95.71 5e-45 X-RAY
 2010-04-14 LEU C:68 NA:NA DO NA DO DO DO NA NA NA
LEU D:68 NA:NA DO NA DO DO DO NA NA NA
5cor 1 P10147 95.71 5e-45 X-RAY
 2016-04-13 LEU A:68 A:68 144.0 0.847 T -83.5 0.3 144.0 0.847 0.0 HOH
 8.342
 N
 O
LEU B:68 B:68 144.0 0.847 T -77.0 -0.6 NA NA NA
LEU C:68 C:68 149.0 0.876 H -77.0 -1.1 86.0 0.506 0.37 A:P10147:0.371
 HEZ
HOH
 8.227
8.855
 C
CG
 C3
O
LEU D:68 D:68 147.0 0.865 S -81.3 1.9 NA NA NA
LEU E:68 E:68 143.0 0.841 H -83.8 -4.2 84.0 0.494 0.347 C:P10147:0.347
 HOH
 4.015
 CD1
 O
LEU F:68 F:68 147.0 0.865 H -82.2 -6.8 NA NA NA
LEU G:68 G:68 144.0 0.847 T -83.1 3.2 84.0 0.494 0.353 E:P10147:0.353
 HOH
 8.247
 CD2
 O
LEU H:68 H:68 144.0 0.847 H -87.6 -7.5 NA NA NA
LEU I:68 I:68 145.0 0.853 H -74.8 -14.4 84.0 0.494 0.359 G:P10147:0.359
LEU J:68 J:68 144.0 0.847 T -80.7 12.0 NA NA NA
5d65 1 P10147 95.71 5e-45 X-RAY
 2016-04-20 LEU A:68 A:68 143.0 0.841 T -83.1 52.9 87.0 0.512 0.329 B:P10147:0.329
 IDS
SGN
SGN
BGC
BGC
 7.773
7.397
8.646
6.507
6.829
 CD2
CD2
CD2
C
CD1
 O5
O5
O1S
O3
O1
LEU B:68 B:68 136.0 0.8 -96.7 65.6 79.0 0.465 0.335 E:P10147:0.335
 IDS
SGN
SGN
 8.145
7.228
7.013
 O
O
O
 O6B
O3S
O5S
LEU C:68 C:68 140.0 0.824 T -108.0 29.1 140.0 0.824 0.0 BGC
 7.278
 C
 O1
LEU D:68 D:68 145.0 0.853 -73.3 59.2 83.0 0.488 0.365 C:P10147:0.365
 BGC
 7.017
 CD2
 O3
LEU E:68 E:68 150.0 0.882 -76.7 64.5 150.0 0.882 0.0
4zkb 2 P10147 97.06 1e-44 X-RAY
 2015-07-08 LEU B:67 NA:NA DO NA DO DO DO NA NA NA
3kbx 1 P10147 92.86 3e-44 X-RAY
 2010-10-27 LEU A:68 A:68 138.0 0.812 T -84.0 48.9 138.0 0.812 0.0
LEU B:68 B:68 138.0 0.812 T -95.5 54.3 NA NA NA
LEU C:68 C:68 146.0 0.859 H -49.1 -36.1 NA NA NA
LEU D:68 D:68 137.0 0.806 T -100.3 50.4 NA NA NA
LEU E:68 E:68 120.0 0.706 -65.2 109.8 NA NA NA
3fpu 2 P10147 95.59 5e-44 X-RAY
 2010-01-12 LEU B:68 NA:NA DO NA DO DO DO NA NA NA
2x6g 1 P10147 94.29 8e-44 X-RAY
 2010-11-03 LEU A:68 A:68 136.0 0.8 H -81.0 -10.4 NA NA NA
LEU B:68 B:68 145.0 0.853 T -86.6 0.7 NA NA NA
LEU C:68 C:68 146.0 0.859 H -80.4 -5.8 NA NA NA
LEU D:68 D:68 138.0 0.812 T -90.5 47.4 NA NA NA
LEU E:68 E:68 135.0 0.794 T -89.3 23.5 NA NA NA
LEU F:68 F:68 147.0 0.865 H -75.2 -17.5 NA NA NA
LEU G:68 G:68 170.0 1.0 -95.3 360.0 NA NA NA
LEU H:68 H:68 172.0 1.0 -122.4 360.0 NA NA NA
LEU I:68 I:68 140.0 0.824 T -95.7 24.7 NA NA NA
LEU J:68 J:68 140.0 0.824 H -78.7 -27.3 NA NA NA
LEU K:68 NA:NA DO NA DO DO DO NA NA NA
LEU L:68 L:68 141.0 0.829 T -66.1 -1.3 NA NA NA
LEU M:68 M:68 175.0 1.0 -108.6 360.0 NA NA NA
LEU N:68 N:68 144.0 0.847 T -79.5 35.3 NA NA NA
LEU O:68 O:68 158.0 0.929 H -68.1 -40.9 NA NA NA
LEU P:68 P:68 131.0 0.771 52.2 38.6 NA NA NA
LEU Q:68 Q:68 145.0 0.853 T -85.5 -2.0 145.0 0.853 0.0 HOH
 3.610
 CD1
 O
LEU R:68 R:68 179.0 1.0 -83.4 360.0 179.0 1.0 0.0 HOH
 3.914
 CB
 O
1b50 1 P10147 95.59 2e-43 NMR
 1999-07-22 LEU A:67 A:67 130.0 0.765 S 83.4 -52.8 130.0 0.765 0.0
LEU B:67 B:67 128.0 0.753 S 83.3 -52.8 128.0 0.753 0.0
1b53 1 P10147 95.59 2e-43 NMR
 1999-07-22 LEU A:67 A:67 127.0 0.747 S 171.4 64.1 127.0 0.747 0.0
LEU B:67 B:67 128.0 0.753 S 171.4 64.1 128.0 0.753 0.0
4ra8 1 P10147 94.2 2e-43 X-RAY
 2014-09-24 LEU A:68 A:68 146.0 0.859 T -95.1 28.3 146.0 0.859 0.0 HOH
 8.452
 CD1
 O
LEU B:68 B:68 139.0 0.818 T -101.3 34.8 NA NA NA
LEU C:68 C:68 145.0 0.853 H -78.0 -6.4 NA NA NA
LEU D:68 D:68 143.0 0.841 T -108.6 28.9 NA NA NA
LEU E:68 E:68 143.0 0.841 H -69.0 -32.9 NA NA NA
7f1q 1 P10147,P51681 95.59 2e-40 EM
 2021-07-14 LEU A:67 R:67 142.0 0.835 H -65.5 -32.6 142.0 0.835 0.0
7f1t 1 P10147,P51681,P00268 95.59 7e-40 X-RAY
 2021-07-14 LEU A:67 A:-29 139.0 0.818 H -65.1 -36.7 139.0 0.818 0.0

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p16619-f1 1 P16619 100.0 6e-65 LEU A:91 A:91 141.0 0.829 T -75.1 -13.1
af-p10147-f1 1 P10147 94.62 3e-59 LEU A:90 A:90 144.0 0.847 T -76.3 -12.4