Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr17 34624329 . C A CCDS11310.1:NM_021006.4:c.212cGg>cTg_NP_066286.1:p.71R>L Homo sapiens chemokine (C-C motif) ligand 3-like 1 (CCL3L1), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
2x69 1 P10147 95.71 5e-45 X-RAY
 2010-11-03 ARG A:48 A:48 132.0 0.587 -51.3 137.1 NA NA NA
ARG B:48 B:48 149.0 0.662 -62.5 134.1 133.0 0.591 0.071 C:P10147:0.071
ARG C:48 C:48 152.0 0.676 -66.5 151.7 135.0 0.6 0.076 B:P10147:0.076
 HOH
 4.849
 NH2
 O
ARG D:48 D:48 156.0 0.693 -74.9 139.2 NA NA NA
ARG E:48 E:48 145.0 0.644 -51.3 147.4 NA NA NA
3h44 2 P10147 95.71 5e-45 X-RAY
 2010-04-14 ARG C:48 C:19 170.0 0.756 -130.7 -157.0 76.0 0.338 0.418 A:P14735:0.418
 ZN
HOH
 1.613
8.606
 O
N
 ZN
O
ARG D:48 D:19 236.0 1.0 -113.8 -166.1 NA NA NA
5cor 1 P10147 95.71 5e-45 X-RAY
 2016-04-13 ARG A:48 A:48 142.0 0.631 -81.3 145.0 57.0 0.253 0.378 C:P10147:0.378
 HEZ
HOH
 9.274
2.314
 NH2
NH1
 O6
O
ARG B:48 B:48 149.0 0.662 -74.1 144.1 NA NA NA
ARG C:48 C:48 143.0 0.636 -77.4 138.9 50.0 0.222 0.414 E:P10147:0.413
 HEZ
HOH
 3.730
6.084
 CG
N
 C6
O
ARG D:48 D:48 142.0 0.631 -79.4 146.2 NA NA NA
ARG E:48 E:48 149.0 0.662 -79.5 149.3 49.0 0.218 0.444 G:P10147:0.444
 HEZ
HOH
 3.523
3.268
 CB
CD
 O6
O
ARG F:48 F:48 144.0 0.64 -75.0 141.2 NA NA NA
ARG G:48 G:48 147.0 0.653 -85.4 146.3 58.0 0.258 0.395 I:P10147:0.396
 ACT
HOH
 9.974
2.273
 C
NH1
 CH3
O
ARG H:48 H:48 148.0 0.658 -75.6 148.6 NA NA NA
ARG I:48 I:48 152.0 0.676 -77.7 138.6 152.0 0.676 0.0 HOH
 6.089
 N
 O
ARG J:48 J:48 145.0 0.644 -75.7 139.2 NA NA NA
5d65 1 P10147 95.71 5e-45 X-RAY
 2016-04-20 ARG A:48 A:48 141.0 0.627 -105.4 151.0 141.0 0.627 0.0
ARG B:48 B:48 144.0 0.64 -93.2 140.6 48.0 0.213 0.427 A:P10147:0.427
 BGC
 9.005
 NH2
 O4
ARG C:48 C:48 146.0 0.649 -103.9 126.1 49.0 0.218 0.431 D:P10147:0.387
B:P10147:0.076
ARG D:48 D:48 126.0 0.56 -104.5 118.7 112.0 0.498 0.062 E:P10147:0.062
 BGC
 4.793
 NH1
 O6
ARG E:48 E:48 155.0 0.689 -101.3 141.9 50.0 0.222 0.467 D:P10147:0.022
B:P10147:0.458
 SGN
 8.674
 NH2
 O2S
4zkb 2 P10147 97.06 1e-44 X-RAY
 2015-07-08 ARG B:47 B:47 251.0 1.0 360.0 -176.4 122.0 0.542 0.458 A:Q2F862:0.573
 NAG
 9.532
 C
 O3
3kbx 1 P10147 92.86 3e-44 X-RAY
 2010-10-27 ARG A:48 A:48 141.0 0.627 -78.5 137.2 128.0 0.569 0.058 A:P10147:0.058
ARG B:48 B:48 157.0 0.698 -72.9 147.1 NA NA NA
ARG C:48 C:48 167.0 0.742 -76.4 139.8 NA NA NA
ARG D:48 D:48 188.0 0.836 -65.3 143.0 NA NA NA
ARG E:48 E:48 191.0 0.849 -75.2 138.2 NA NA NA
3fpu 2 P10147 95.59 5e-44 X-RAY
 2010-01-12 ARG B:48 B:48 169.0 0.751 -83.4 136.2 37.0 0.164 0.587 A:P0C8E7:0.587
 HOH
 2.863
 CZ
 O
2x6g 1 P10147 94.29 8e-44 X-RAY
 2010-11-03 ARG A:48 A:48 138.0 0.613 -87.0 134.9 NA NA NA
ARG B:48 B:48 139.0 0.618 -77.5 143.6 NA NA NA
ARG C:48 C:48 144.0 0.64 -81.7 134.5 NA NA NA
ARG D:48 D:48 144.0 0.64 -94.5 136.7 NA NA NA
ARG E:48 E:48 152.0 0.676 -91.0 139.8 NA NA NA
ARG F:48 F:48 141.0 0.627 -88.2 132.5 NA NA NA
ARG G:48 G:48 145.0 0.644 -95.4 138.5 NA NA NA
ARG H:48 H:48 143.0 0.636 -85.3 138.8 NA NA NA
ARG I:48 I:48 187.0 0.831 -80.0 135.7 NA NA NA
ARG J:48 J:48 111.0 0.493 -87.7 146.8 NA NA NA
ARG K:48 K:48 151.0 0.671 -66.9 144.2 NA NA NA
ARG L:48 L:48 140.0 0.622 E -130.1 134.2 NA NA NA
ARG M:48 M:48 179.0 0.796 -83.5 141.4 NA NA NA
ARG N:48 N:48 137.0 0.609 -81.6 135.6 NA NA NA
ARG O:48 O:48 153.0 0.68 -83.0 141.0 NA NA NA
ARG P:48 P:48 145.0 0.644 -59.3 132.9 NA NA NA
ARG Q:48 Q:48 111.0 0.493 -100.8 145.1 107.0 0.476 0.017 R:P10147:0.018
ARG R:48 R:48 160.0 0.711 -88.7 147.3 132.0 0.587 0.124 Q:P10147:0.124
 HOH
 2.603
 NH2
 O
1b50 1 P10147 95.59 2e-43 NMR
 1999-07-22 ARG A:47 A:47 178.0 0.791 -112.8 96.6 140.0 0.622 0.169 B:P10147:0.169
ARG B:47 B:47 178.0 0.791 -112.8 96.5 138.0 0.613 0.178 A:P10147:0.178
1b53 1 P10147 95.59 2e-43 NMR
 1999-07-22 ARG A:47 A:47 169.0 0.751 -106.2 95.6 143.0 0.636 0.115 B:P10147:0.116
ARG B:47 B:47 169.0 0.751 -106.2 95.6 120.0 0.533 0.218 A:P10147:0.218
4ra8 1 P10147 94.2 2e-43 X-RAY
 2014-09-24 ARG A:48 A:48 140.0 0.622 -74.3 136.3 129.0 0.573 0.049 A:P10147:0.049
ARG B:48 B:48 145.0 0.644 -75.5 136.8 NA NA NA
ARG C:48 C:48 147.0 0.653 -100.7 127.6 NA NA NA
ARG D:48 D:48 156.0 0.693 -113.6 143.9 NA NA NA
ARG E:48 E:48 138.0 0.613 -89.4 140.9 NA NA NA
7f1q 1 P10147,P51681 95.59 2e-40 EM
 2021-07-14 ARG A:47 R:47 53.0 NA -64.3 136.5 53.0 NA NA
7f1t 1 P10147,P51681,P00268 95.59 7e-40 X-RAY
 2021-07-14 ARG A:47 A:-49 110.0 0.489 -66.7 167.4 110.0 0.489 0.0

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p16619-f1 1 P16619 100.0 6e-65 ARG A:71 A:71 167.0 0.742 -83.5 137.2
af-p10147-f1 1 P10147 94.62 3e-59 ARG A:70 A:70 173.0 0.769 -87.2 135.5