Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr17 34624338 . T A CCDS11310.1:NM_021006.4:c.203aAg>aTg_NP_066286.1:p.68K>M Homo sapiens chemokine (C-C motif) ligand 3-like 1 (CCL3L1), mRNA.
pdb_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id
alphafold_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
2x69 1 P10147 95.71 5e-45 X-RAY
2010-11-03 LYS A:45 A:45 144.0 0.72 T -57.7 -41.4 NA NA NA
LYS B:45 B:45 147.0 0.735 T -69.9 -24.2 147.0 0.735 0.0
LYS C:45 C:45 140.0 0.7 T -61.5 -36.1 140.0 0.7 0.0 HOH
4.498
O
O
LYS D:45 D:45 150.0 0.75 T -54.7 -21.2 NA NA NA
LYS E:45 E:45 149.0 0.745 T -55.3 -37.6 NA NA NA
3h44 2 P10147 95.71 5e-45 X-RAY
2010-04-14 LYS C:45 C:16 235.0 1.0 360.0 -62.0 103.0 0.515 0.485 A:P14735:0.66
DIO
HOH
5.134
7.838
CE
N
C1
O
LYS D:45 NA:NA DO NA DO DO DO NA NA NA
5cor 1 P10147 95.71 5e-45 X-RAY
2016-04-13 LYS A:45 A:45 143.0 0.715 T -55.5 -26.4 87.0 0.435 0.28 C:P10147:0.28
HOH
8.369
C
O
LYS B:45 B:45 141.0 0.705 T -69.6 -25.1 NA NA NA
LYS C:45 C:45 150.0 0.75 T -68.5 -18.9 99.0 0.495 0.255 E:P10147:0.255
HEZ
HEZ
HOH
5.903
7.714
3.949
CE
N
O
C6
C5
O
LYS D:45 D:45 148.0 0.74 T -66.8 -19.6 NA NA NA
LYS E:45 E:45 143.0 0.715 T -66.6 -24.9 88.0 0.44 0.275 G:P10147:0.275
HEZ
HOH
7.909
6.743
N
NZ
C6
O
LYS F:45 F:45 143.0 0.715 T -73.0 -15.8 NA NA NA
LYS G:45 G:45 146.0 0.73 T -70.5 -21.2 95.0 0.475 0.255 I:P10147:0.255
HOH
7.626
C
O
LYS H:45 H:45 148.0 0.74 T -68.4 -25.0 NA NA NA
LYS I:45 I:45 145.0 0.725 T -70.5 -23.1 145.0 0.725 0.0 HOH
3.787
O
O
LYS J:45 J:45 148.0 0.74 T -77.2 -16.9 NA NA NA
5d65 1 P10147 95.71 5e-45 X-RAY
2016-04-20 LYS A:45 A:45 146.0 0.73 T -69.2 -17.1 146.0 0.73 0.0 BGC
4.248
CE
C6
LYS B:45 B:45 149.0 0.745 T -74.0 -19.1 107.0 0.535 0.21 A:P10147:0.21
IDS
SGN
SGN
BGC
4.667
3.274
7.469
9.417
NZ
NZ
NZ
O
C4
O5
O4
O3
LYS C:45 C:45 150.0 0.75 T -77.5 2.8 107.0 0.535 0.215 D:P10147:0.215
BGC
3.458
NZ
O3
LYS D:45 D:45 161.0 0.805 T -71.8 -13.8 161.0 0.805 0.0
LYS E:45 E:45 159.0 0.795 T -63.3 -21.6 108.0 0.54 0.255 B:P10147:0.255
SGN
9.063
O
O2S
4zkb 2 P10147 97.06 1e-44 X-RAY
2015-07-08 LYS B:44 NA:NA DO NA DO DO DO NA NA NA
3kbx 1 P10147 92.86 3e-44 X-RAY
2010-10-27 LYS A:45 A:45 139.0 0.695 T -72.2 -26.1 139.0 0.695 0.0
LYS B:45 B:45 133.0 0.665 T -71.5 -14.9 NA NA NA
LYS C:45 C:45 139.0 0.695 T -65.2 -32.5 NA NA NA
LYS D:45 D:45 145.0 0.725 T -51.6 -28.6 NA NA NA
LYS E:45 E:45 150.0 0.75 T -72.4 -15.9 NA NA NA
3fpu 2 P10147 95.59 5e-44 X-RAY
2010-01-12 LYS B:45 B:45 106.0 0.53 T -67.9 -20.1 106.0 0.53 0.0 HOH
2.833
NZ
O
2x6g 1 P10147 94.29 8e-44 X-RAY
2010-11-03 LYS A:45 A:45 131.0 0.655 T -63.0 -24.4 NA NA NA
LYS B:45 B:45 150.0 0.75 T -69.4 -21.7 NA NA NA
LYS C:45 C:45 148.0 0.74 T -59.8 -27.3 NA NA NA
LYS D:45 D:45 135.0 0.675 T -64.9 -27.8 NA NA NA
LYS E:45 E:45 124.0 0.62 T -63.8 -30.0 NA NA NA
LYS F:45 F:45 142.0 0.71 T -58.7 -34.1 NA NA NA
LYS G:45 G:45 122.0 0.61 T -54.0 -23.2 NA NA NA
LYS H:45 H:45 134.0 0.67 T -54.9 -25.6 NA NA NA
LYS I:45 I:45 136.0 0.68 T -68.2 -26.2 NA NA NA
LYS J:45 J:45 143.0 0.715 T -56.3 -22.4 NA NA NA
LYS K:45 K:45 153.0 0.765 T -65.8 -5.2 NA NA NA
LYS L:45 L:45 122.0 0.61 T -75.1 -34.6 NA NA NA
LYS M:45 M:45 141.0 0.705 T -64.0 -9.3 NA NA NA
LYS N:45 N:45 147.0 0.735 T -66.0 -17.1 NA NA NA
LYS O:45 O:45 135.0 0.675 T -67.0 -26.5 NA NA NA
LYS P:45 P:45 141.0 0.705 T -72.7 -19.0 NA NA NA
LYS Q:45 Q:45 143.0 0.715 T -58.0 -32.6 143.0 0.715 0.0 HOH
9.236
CE
O
LYS R:45 R:45 130.0 0.65 T -69.8 6.7 130.0 0.65 0.0 HOH
4.306
NZ
O
1b50 1 P10147 95.59 2e-43 NMR
1999-07-22 LYS A:44 A:44 140.0 0.7 T -84.8 -17.3 140.0 0.7 0.0
LYS B:44 B:44 142.0 0.71 T -84.8 -17.3 142.0 0.71 0.0
1b53 1 P10147 95.59 2e-43 NMR
1999-07-22 LYS A:44 A:44 142.0 0.71 T -61.6 -13.3 142.0 0.71 0.0
LYS B:44 B:44 141.0 0.705 T -61.5 -13.4 141.0 0.705 0.0
4ra8 1 P10147 94.2 2e-43 X-RAY
2014-09-24 LYS A:45 A:45 142.0 0.71 T -59.2 -32.5 142.0 0.71 0.0
LYS B:45 B:45 147.0 0.735 T -69.9 -20.9 NA NA NA
LYS C:45 C:45 119.0 0.595 T -69.4 -14.4 NA NA NA
LYS D:45 D:45 144.0 0.72 T -72.1 -12.2 NA NA NA
LYS E:45 E:45 147.0 0.735 T -71.1 -25.3 NA NA NA
7f1q 1 P10147,P51681 95.59 2e-40 EM
2021-07-14 LYS A:44 R:44 103.0 NA S -62.6 -36.5 103.0 NA NA
7f1t 1 P10147,P51681,P00268 95.59 7e-40 X-RAY
2021-07-14 LYS A:44 A:-52 114.0 0.57 S -85.1 8.7 114.0 0.57 0.0

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p16619-f1 1 P16619 100.0 6e-65 LYS A:68 A:68 147.0 0.735 T -57.9 -14.6
af-p10147-f1 1 P10147 94.62 3e-59 LYS A:67 A:67 143.0 0.715 T -59.5 -13.4