Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr17 34624348 . A C CCDS11310.1:NM_021006.4:c.193Ttc>Gtc_NP_066286.1:p.65F>V Homo sapiens chemokine (C-C motif) ligand 3-like 1 (CCL3L1), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
2x69 1 P10147 95.71 5e-45 X-RAY
 2010-11-03 PHE A:42 A:42 0.0 0.0 E -80.4 136.2 NA NA NA
PHE B:42 B:42 0.0 0.0 E -88.2 143.8 0.0 0.0 0.0 HOH
 9.705
 CE2
 O
PHE C:42 C:42 0.0 0.0 E -85.2 134.0 0.0 0.0 0.0
PHE D:42 D:42 0.0 0.0 E -84.7 154.8 NA NA NA
PHE E:42 E:42 0.0 0.0 E -84.0 146.5 NA NA NA
3h44 2 P10147 95.71 5e-45 X-RAY
 2010-04-14 PHE C:42 NA:NA DO NA DO DO DO NA NA NA
PHE D:42 NA:NA DO NA DO DO DO NA NA NA
5cor 1 P10147 95.71 5e-45 X-RAY
 2016-04-13 PHE A:42 A:42 0.0 0.0 E -87.1 126.3 0.0 0.0 0.0 HEZ
HOH
 9.685
6.044
 N
CE1
 O1
O
PHE B:42 B:42 0.0 0.0 E -97.7 131.0 NA NA NA
PHE C:42 C:42 0.0 0.0 E -89.6 138.3 0.0 0.0 0.0 HEZ
HEZ
HOH
 6.018
7.107
6.854
 CE1
O
CE2
 O1
C5
O
PHE D:42 D:42 0.0 0.0 E -87.1 137.5 NA NA NA
PHE E:42 E:42 0.0 0.0 E -88.3 137.8 0.0 0.0 0.0 HEZ
HEZ
HEZ
HOH
 9.967
7.305
9.227
6.039
 CZ
O
CE1
CE1
 C6
C6
C1
O
PHE F:42 F:42 0.0 0.0 E -88.3 136.0 NA NA NA
PHE G:42 G:42 0.0 0.0 E -93.2 131.7 0.0 0.0 0.0 HOH
 5.680
 CE1
 O
PHE H:42 H:42 0.0 0.0 E -88.6 134.2 NA NA NA
PHE I:42 I:42 0.0 0.0 E -94.6 133.7 0.0 0.0 0.0 HOH
 6.997
 CE2
 O
PHE J:42 J:42 0.0 0.0 E -88.8 142.9 NA NA NA
5d65 1 P10147 95.71 5e-45 X-RAY
 2016-04-20 PHE A:42 A:42 0.0 0.0 E -86.1 133.2 0.0 0.0 0.0 BGC
 9.333
 CD1
 C1
PHE B:42 B:42 0.0 0.0 E -82.4 134.5 0.0 0.0 0.0 IDS
SGN
BGC
 8.478
9.761
7.887
 CE1
CD1
CZ
 O6A
N2
O2
PHE C:42 C:42 0.0 0.0 E -86.3 131.9 0.0 0.0 0.0 BGC
 6.861
 CE1
 O6
PHE D:42 D:42 0.0 0.0 E -83.4 144.6 0.0 0.0 0.0
PHE E:42 E:42 0.0 0.0 E -80.2 138.4 0.0 0.0 0.0
4zkb 2 P10147 97.06 1e-44 X-RAY
 2015-07-08 PHE B:41 B:41 40.0 NA E -121.3 122.6 40.0 NA NA
3kbx 1 P10147 92.86 3e-44 X-RAY
 2010-10-27 PHE A:42 A:42 0.0 0.0 E -86.7 143.0 0.0 0.0 0.0 HOH
 7.222
 CE2
 O
PHE B:42 B:42 2.0 0.01 E -87.7 144.5 NA NA NA
PHE C:42 C:42 0.0 0.0 E -89.3 143.9 NA NA NA
PHE D:42 D:42 1.0 0.005 E -100.3 147.9 NA NA NA
PHE E:42 E:42 2.0 0.01 E -85.6 144.4 NA NA NA
3fpu 2 P10147 95.59 5e-44 X-RAY
 2010-01-12 PHE B:42 B:42 0.0 0.0 E -97.5 141.7 0.0 0.0 0.0 HOH
 5.742
 CE1
 O
2x6g 1 P10147 94.29 8e-44 X-RAY
 2010-11-03 PHE A:42 A:42 0.0 0.0 E -104.9 142.5 NA NA NA
PHE B:42 B:42 0.0 0.0 E -91.2 136.1 NA NA NA
PHE C:42 C:42 0.0 0.0 E -96.4 137.5 NA NA NA
PHE D:42 D:42 0.0 0.0 E -83.7 136.1 NA NA NA
PHE E:42 E:42 0.0 0.0 E -89.8 136.9 NA NA NA
PHE F:42 F:42 0.0 0.0 E -97.2 137.6 NA NA NA
PHE G:42 G:42 4.0 0.019 E -91.8 142.0 NA NA NA
PHE H:42 H:42 0.0 0.0 E -98.7 139.4 NA NA NA
PHE I:42 I:42 0.0 0.0 E -98.3 146.2 NA NA NA
PHE J:42 J:42 0.0 0.0 E -96.7 135.6 NA NA NA
PHE K:42 K:42 0.0 0.0 E -90.4 135.4 NA NA NA
PHE L:42 L:42 0.0 0.0 E -90.8 142.3 NA NA NA
PHE M:42 M:42 0.0 0.0 E -92.4 137.0 NA NA NA
PHE N:42 N:42 0.0 0.0 E -94.5 143.3 NA NA NA
PHE O:42 O:42 0.0 0.0 E -100.7 133.8 NA NA NA
PHE P:42 P:42 0.0 0.0 E -90.0 135.9 NA NA NA
PHE Q:42 Q:42 0.0 0.0 E -95.5 126.7 0.0 0.0 0.0 HOH
 5.754
 CE1
 O
PHE R:42 R:42 0.0 0.0 E -84.3 139.2 0.0 0.0 0.0 HOH
 6.629
 O
 O
1b50 1 P10147 95.59 2e-43 NMR
 1999-07-22 PHE A:41 A:41 0.0 0.0 E -119.0 -176.0 0.0 0.0 0.0
PHE B:41 B:41 0.0 0.0 E -119.0 -176.0 0.0 0.0 0.0
1b53 1 P10147 95.59 2e-43 NMR
 1999-07-22 PHE A:41 A:41 0.0 0.0 -150.8 171.1 0.0 0.0 0.0
PHE B:41 B:41 0.0 0.0 -150.9 171.1 0.0 0.0 0.0
4ra8 1 P10147 94.2 2e-43 X-RAY
 2014-09-24 PHE A:42 A:42 0.0 0.0 E -87.8 144.2 0.0 0.0 0.0 HOH
 8.323
 CZ
 O
PHE B:42 B:42 0.0 0.0 E -86.5 141.7 NA NA NA
PHE C:42 C:42 0.0 0.0 E -90.8 135.7 NA NA NA
PHE D:42 D:42 0.0 0.0 E -89.2 146.9 NA NA NA
PHE E:42 E:42 0.0 0.0 E -83.7 144.3 NA NA NA
7f1q 1 P10147,P51681 95.59 2e-40 EM
 2021-07-14 PHE A:41 R:41 1.0 0.005 E -97.7 119.5 1.0 0.005 0.0
7f1t 1 P10147,P51681,P00268 95.59 7e-40 X-RAY
 2021-07-14 PHE A:41 A:-55 0.0 0.0 E -96.6 133.9 0.0 0.0 0.0

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p16619-f1 1 P16619 100.0 6e-65 PHE A:65 A:65 0.0 0.0 E -81.2 129.3
af-p10147-f1 1 P10147 94.62 3e-59 PHE A:64 A:64 0.0 0.0 E -80.3 129.2