Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr17 34624828 . T A CCDS11310.1:NM_021006.4:c.134cAg>cTg_NP_066286.1:p.45Q>L Homo sapiens chemokine (C-C motif) ligand 3-like 1 (CCL3L1), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
2x69 1 P10147 95.71 5e-45 X-RAY
 2010-11-03 GLN A:22 A:22 69.0 0.383 G -68.1 -26.1 NA NA NA
GLN B:22 B:22 74.0 0.411 G -61.4 -31.6 74.0 0.411 0.0
GLN C:22 C:22 81.0 0.45 G -54.0 -24.5 81.0 0.45 0.0
GLN D:22 D:22 70.0 0.389 G -42.4 -41.4 NA NA NA
GLN E:22 E:22 69.0 0.383 T -63.0 -31.2 NA NA NA
3h44 2 P10147 95.71 5e-45 X-RAY
 2010-04-14 GLN C:22 NA:NA DO NA DO DO DO NA NA NA
GLN D:22 NA:NA DO NA DO DO DO NA NA NA
5cor 1 P10147 95.71 5e-45 X-RAY
 2016-04-13 GLN A:22 A:22 71.0 0.394 G -57.1 -33.5 71.0 0.394 0.0 HOH
 2.889
 NE2
 O
GLN B:22 B:22 80.0 0.444 G -60.5 -30.7 NA NA NA
GLN C:22 C:22 85.0 0.472 G -61.5 -26.8 85.0 0.472 0.0 HEZ
HEZ
HOH
 3.256
8.773
7.089
 NE2
N
N
 O1
C1
O
GLN D:22 D:22 75.0 0.417 G -62.1 -28.2 NA NA NA
GLN E:22 E:22 82.0 0.456 G -61.1 -31.9 82.0 0.456 0.0 HEZ
HEZ
HOH
 2.977
8.303
3.139
 N
N
NE2
 O1
C4
O
GLN F:22 F:22 66.0 0.367 G -60.0 -29.3 NA NA NA
GLN G:22 G:22 76.0 0.422 G -59.3 -27.7 76.0 0.422 0.0 HOH
 2.624
 OE1
 O
GLN H:22 H:22 74.0 0.411 G -61.7 -33.7 NA NA NA
GLN I:22 I:22 74.0 0.411 G -63.5 -29.3 74.0 0.411 0.0 ACT
 4.923
 OE1
 CH3
GLN J:22 J:22 69.0 0.383 G -58.2 -29.8 NA NA NA
5d65 1 P10147 95.71 5e-45 X-RAY
 2016-04-20 GLN A:22 A:22 70.0 0.389 G -59.7 -31.9 70.0 0.389 0.0 BGC
BGC
 4.321
5.356
 O
OE1
 O1
O6
GLN B:22 B:22 62.0 0.344 G -60.5 -22.0 62.0 0.344 0.0 IDS
SGN
IDS
SGN
BGC
 3.253
6.100
4.360
2.622
6.031
 O
O
OE1
OE1
N
 O5
O5
O3
O3
O1
GLN C:22 C:22 88.0 0.489 G -64.6 -39.3 88.0 0.489 0.0 BGC
 2.730
 O
 O4
GLN D:22 D:22 91.0 0.506 G -56.4 -28.6 91.0 0.506 0.0 BGC
 8.615
 N
 C1
GLN E:22 E:22 70.0 0.389 G -58.3 -34.7 70.0 0.389 0.0 BGC
 8.037
 N
 O6
4zkb 2 P10147 97.06 1e-44 X-RAY
 2015-07-08 GLN B:21 NA:NA DO NA DO DO DO NA NA NA
3kbx 1 P10147 92.86 3e-44 X-RAY
 2010-10-27 GLN A:22 A:22 64.0 0.356 G -66.2 -26.8 64.0 0.356 0.0
GLN B:22 B:22 65.0 0.361 G -68.7 -33.3 NA NA NA
GLN C:22 C:22 63.0 0.35 G -53.0 -32.5 NA NA NA
GLN D:22 D:22 68.0 0.378 G -56.6 -37.6 NA NA NA
GLN E:22 E:22 62.0 0.344 G -56.7 -28.6 NA NA NA
3fpu 2 P10147 95.59 5e-44 X-RAY
 2010-01-12 GLN B:22 B:22 82.0 0.456 G -57.1 -37.8 82.0 0.456 0.0 HOH
 2.884
 N
 O
2x6g 1 P10147 94.29 8e-44 X-RAY
 2010-11-03 GLN A:22 A:22 76.0 0.422 G -61.7 -28.4 NA NA NA
GLN B:22 B:22 81.0 0.45 G -73.0 -28.6 NA NA NA
GLN C:22 C:22 79.0 0.439 G -67.5 -36.0 NA NA NA
GLN D:22 D:22 66.0 0.367 G -59.3 -35.0 NA NA NA
GLN E:22 E:22 76.0 0.422 G -63.4 -33.7 NA NA NA
GLN F:22 F:22 66.0 0.367 G -65.1 -35.9 NA NA NA
GLN G:22 G:22 68.0 0.378 G -55.8 -38.5 NA NA NA
GLN H:22 H:22 76.0 0.422 G -66.3 -29.2 NA NA NA
GLN I:22 I:22 73.0 0.406 G -71.5 -32.8 NA NA NA
GLN J:22 J:22 73.0 0.406 G -46.1 -36.9 NA NA NA
GLN K:22 K:22 70.0 0.389 G -67.3 -23.1 NA NA NA
GLN L:22 L:22 70.0 0.389 G -50.9 -37.5 NA NA NA
GLN M:22 M:22 58.0 0.322 G -57.3 -31.4 NA NA NA
GLN N:22 N:22 68.0 0.378 G -61.7 -32.4 NA NA NA
GLN O:22 O:22 82.0 0.456 G -52.5 -39.7 NA NA NA
GLN P:22 P:22 83.0 0.461 G -52.9 -38.8 NA NA NA
GLN Q:22 Q:22 105.0 0.583 T -66.1 -9.7 105.0 0.583 0.0 HOH
 3.492
 NE2
 O
GLN R:22 R:22 67.0 0.372 G -50.8 -32.7 67.0 0.372 0.0 HOH
 3.250
 O
 O
1b50 1 P10147 95.59 2e-43 NMR
 1999-07-22 GLN A:21 A:21 104.0 0.578 T -75.1 14.2 104.0 0.578 0.0
GLN B:21 B:21 105.0 0.583 T -75.1 14.2 105.0 0.583 0.0
1b53 1 P10147 95.59 2e-43 NMR
 1999-07-22 GLN A:21 A:21 111.0 0.617 G -65.9 -28.9 111.0 0.617 0.0
GLN B:21 B:21 111.0 0.617 G -65.8 -28.8 111.0 0.617 0.0
4ra8 1 P10147 94.2 2e-43 X-RAY
 2014-09-24 GLN A:22 A:22 74.0 0.411 G -62.0 -28.2 74.0 0.411 0.0
GLN B:22 B:22 76.0 0.422 G -61.3 -25.0 NA NA NA
GLN C:22 C:22 76.0 0.422 G -65.4 -25.0 NA NA NA
GLN D:22 D:22 75.0 0.417 G -60.9 -28.2 NA NA NA
GLN E:22 E:22 75.0 0.417 G -64.9 -30.1 NA NA NA
7f1q 1 P10147,P51681 95.59 2e-40 EM
 2021-07-14 GLN A:21 R:21 87.0 0.483 S -73.6 -31.2 87.0 0.483 0.0
7f1t 1 P10147,P51681,P00268 95.59 7e-40 X-RAY
 2021-07-14 GLN A:21 A:-75 82.0 0.456 G -50.8 -38.8 82.0 0.456 0.0

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p16619-f1 1 P16619 100.0 6e-65 GLN A:45 A:45 83.0 0.461 G -57.1 -35.9
af-p10147-f1 1 P10147 94.62 3e-59 GLN A:44 A:44 85.0 0.472 G -57.3 -35.6