Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr17 34624851 . G A CCDS11310.1:NM_021006.4:c.111agC>agT_NP_066286.1:p.37S>S Homo sapiens chemokine (C-C motif) ligand 3-like 1 (CCL3L1), mRNA.
pdb_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id
alphafold_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
2x69 1 P10147 95.71 5e-45 X-RAY
2010-11-03 SER A:14 A:14 84.0 0.73 -155.9 176.5 NA NA NA
SER B:14 B:14 87.0 0.757 S -152.7 174.4 56.0 0.487 0.27 C:P10147:0.27
HOH
3.974
N
O
SER C:14 C:14 92.0 0.8 S -134.8 159.0 63.0 0.548 0.252 B:P10147:0.252
SER D:14 D:14 91.0 0.791 S -155.6 159.5 NA NA NA
SER E:14 E:14 91.0 0.791 S -154.1 157.9 NA NA NA
3h44 2 P10147 95.71 5e-45 X-RAY
2010-04-14 SER C:14 NA:NA DO NA DO DO DO NA NA NA
SER D:14 NA:NA DO NA DO DO DO NA NA NA
5cor 1 P10147 95.71 5e-45 X-RAY
2016-04-13 SER A:14 A:14 97.0 0.843 S -120.2 130.1 51.0 0.443 0.4 C:P10147:0.4
HOH
6.746
C
O
SER B:14 B:14 90.0 0.783 S -157.5 150.5 NA NA NA
SER C:14 C:14 90.0 0.783 S -155.6 138.0 42.0 0.365 0.418 E:P10147:0.417
HOH
6.642
N
O
SER D:14 D:14 95.0 0.826 S -142.3 121.6 NA NA NA
SER E:14 E:14 89.0 0.774 S -162.8 145.2 73.0 0.635 0.139 G:P10147:0.139
HOH
6.544
N
O
SER F:14 F:14 94.0 0.817 S -134.2 140.7 NA NA NA
SER G:14 G:14 93.0 0.809 S -138.3 139.7 44.0 0.383 0.426 I:P10147:0.426
HOH
7.176
N
O
SER H:14 H:14 93.0 0.809 S -161.3 145.6 NA NA NA
SER I:14 I:14 91.0 0.791 S -159.0 149.8 91.0 0.791 0.0 HOH
3.564
N
O
SER J:14 J:14 96.0 0.835 S -135.8 134.7 NA NA NA
5d65 1 P10147 95.71 5e-45 X-RAY
2016-04-20 SER A:14 A:14 88.0 0.765 S -145.0 129.9 88.0 0.765 0.0 BGC
9.206
C
O6
SER B:14 B:14 88.0 0.765 S -158.7 145.8 13.0 0.113 0.652 C:P10147:0.261
A:P10147:0.47
SER C:14 C:14 98.0 0.852 S -147.0 113.4 21.0 0.183 0.669 D:P10147:0.53
B:P10147:0.27
BGC
3.634
CB
O6
SER D:14 D:14 96.0 0.835 S -146.4 110.6 66.0 0.574 0.261 E:P10147:0.261
SER E:14 E:14 96.0 0.835 S -153.5 122.1 23.0 0.2 0.635 D:P10147:0.243
B:P10147:0.504
BGC
GLC
3.264
9.097
CB
OG
O2
O1
4zkb 2 P10147 97.06 1e-44 X-RAY
2015-07-08 SER B:13 B:13 101.0 0.878 -147.9 134.6 30.0 0.261 0.617 A:Q2F862:0.617
3kbx 1 P10147 92.86 3e-44 X-RAY
2010-10-27 SER A:14 A:14 86.0 0.748 S -152.7 154.8 50.0 0.435 0.313 A:P10147:0.313
ACT
HOH
7.232
6.829
CB
C
CH3
O
SER B:14 B:14 90.0 0.783 S -151.0 159.3 NA NA NA
SER C:14 C:14 93.0 0.809 S -138.1 156.4 NA NA NA
SER D:14 D:14 90.0 0.783 S -157.8 154.3 NA NA NA
SER E:14 E:14 91.0 0.791 S -153.8 151.1 NA NA NA
3fpu 2 P10147 95.59 5e-44 X-RAY
2010-01-12 SER B:14 B:14 88.0 0.765 S -149.1 174.6 42.0 0.365 0.4 A:P0C8E7:0.4
HOH
3.130
CB
O
2x6g 1 P10147 94.29 8e-44 X-RAY
2010-11-03 SER A:14 A:14 90.0 0.783 S -145.8 169.6 NA NA NA
SER B:14 B:14 87.0 0.757 S -160.3 164.3 NA NA NA
SER C:14 C:14 93.0 0.809 S -141.2 166.9 NA NA NA
SER D:14 D:14 90.0 0.783 S -155.4 148.8 NA NA NA
SER E:14 E:14 87.0 0.757 S -149.6 157.4 NA NA NA
SER F:14 F:14 91.0 0.791 S -141.0 161.6 NA NA NA
SER G:14 G:14 90.0 0.783 S -148.6 152.2 NA NA NA
SER H:14 H:14 88.0 0.765 S -157.8 147.1 NA NA NA
SER I:14 I:14 84.0 0.73 S -164.0 170.0 NA NA NA
SER J:14 J:14 89.0 0.774 S -157.5 155.5 NA NA NA
SER K:14 K:14 77.0 0.67 S -148.0 149.6 NA NA NA
SER L:14 L:14 91.0 0.791 S -149.7 171.4 NA NA NA
SER M:14 M:14 88.0 0.765 S -134.5 166.5 NA NA NA
SER N:14 N:14 82.0 0.713 S -171.6 163.4 NA NA NA
SER O:14 O:14 90.0 0.783 S -141.5 159.1 NA NA NA
SER P:14 P:14 93.0 0.809 S -128.9 145.8 NA NA NA
SER Q:14 Q:14 88.0 0.765 -137.1 157.6 52.0 0.452 0.313 R:P10147:0.313
HOH
5.327
OG
O
SER R:14 R:14 96.0 0.835 S -135.1 144.8 51.0 0.443 0.392 Q:P10147:0.391
HOH
3.672
N
O
1b50 1 P10147 95.59 2e-43 NMR
1999-07-22 SER A:13 A:13 99.0 0.861 -167.3 124.6 96.0 0.835 0.026 B:P10147:0.026
SER B:13 B:13 99.0 0.861 -167.3 124.5 97.0 0.843 0.018 A:P10147:0.017
1b53 1 P10147 95.59 2e-43 NMR
1999-07-22 SER A:13 A:13 97.0 0.843 S -114.2 104.2 33.0 0.287 0.556 B:P10147:0.557
SER B:13 B:13 98.0 0.852 S -114.2 104.1 47.0 0.409 0.443 A:P10147:0.443
4ra8 1 P10147 94.2 2e-43 X-RAY
2014-09-24 SER A:14 A:14 89.0 0.774 S -160.8 151.1 72.0 0.626 0.148 A:P10147:0.148
HOH
4.161
N
O
SER B:14 B:14 88.0 0.765 S -155.6 157.4 NA NA NA
SER C:14 C:14 91.0 0.791 S -152.8 146.4 NA NA NA
SER D:14 D:14 93.0 0.809 S -155.5 127.4 NA NA NA
SER E:14 E:14 91.0 0.791 S -149.0 150.7 NA NA NA
7f1q 1 P10147,P51681 95.59 2e-40 EM
2021-07-14 SER A:13 R:13 54.0 0.47 -120.0 133.0 54.0 0.47 0.0
7f1t 1 P10147,P51681,P00268 95.59 7e-40 X-RAY
2021-07-14 SER A:13 A:-83 53.0 0.461 S -157.4 169.9 53.0 0.461 0.0

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p16619-f1 1 P16619 100.0 6e-65 SER A:37 A:37 88.0 0.765 S -139.2 158.7
af-p10147-f1 1 P10147 94.62 3e-59 SER A:36 A:36 88.0 0.765 S -138.4 159.5