Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr17 34624855 . A C CCDS11310.1:NM_021006.4:c.107tTc>tGc_NP_066286.1:p.36F>C Homo sapiens chemokine (C-C motif) ligand 3-like 1 (CCL3L1), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
2x69 1 P10147 95.71 5e-45 X-RAY
 2010-11-03 PHE A:13 A:13 145.0 0.69 S -119.4 -10.5 NA NA NA
PHE B:13 B:13 149.0 0.71 S -122.9 -12.6 39.0 0.186 0.524 C:P10147:0.524
 HOH
 2.942
 N
 O
PHE C:13 C:13 150.0 0.714 S -115.3 -20.9 33.0 0.157 0.557 B:P10147:0.557
 HOH
 8.044
 CZ
 O
PHE D:13 D:13 149.0 0.71 S -111.6 -10.3 NA NA NA
PHE E:13 E:13 146.0 0.695 S -104.5 -11.5 NA NA NA
3h44 2 P10147 95.71 5e-45 X-RAY
 2010-04-14 PHE C:13 NA:NA DO NA DO DO DO NA NA NA
PHE D:13 NA:NA DO NA DO DO DO NA NA NA
5cor 1 P10147 95.71 5e-45 X-RAY
 2016-04-13 PHE A:13 A:13 130.0 0.619 S -106.3 -40.6 130.0 0.619 0.0 HOH
 4.146
 CE1
 O
PHE B:13 B:13 152.0 0.724 S -111.2 -5.9 NA NA NA
PHE C:13 C:13 144.0 0.686 S -117.9 -6.7 143.0 0.681 0.005 E:P10147:0.005
 HOH
 3.673
 CE1
 O
PHE D:13 D:13 140.0 0.667 S -119.3 -17.6 NA NA NA
PHE E:13 E:13 152.0 0.724 S -114.3 1.0 131.0 0.624 0.1 G:P10147:0.1
 HOH
 3.551
 CE1
 O
PHE F:13 F:13 147.0 0.7 S -117.2 -22.3 NA NA NA
PHE G:13 G:13 139.0 0.662 S -116.5 -26.0 139.0 0.662 0.0 ACT
HOH
 9.554
3.828
 CD2
CE1
 OXT
O
PHE H:13 H:13 135.0 0.643 S -122.4 -0.2 NA NA NA
PHE I:13 I:13 146.0 0.695 S -121.5 -2.0 146.0 0.695 0.0 HOH
 2.728
 N
 O
PHE J:13 J:13 136.0 0.648 S -122.9 -22.4 NA NA NA
5d65 1 P10147 95.71 5e-45 X-RAY
 2016-04-20 PHE A:13 A:13 136.0 0.648 S -109.1 -8.2 136.0 0.648 0.0 BGC
 8.460
 O
 O1
PHE B:13 B:13 136.0 0.648 S -112.8 0.7 17.0 0.081 0.567 C:P10147:0.538
A:P10147:0.048
 CL
 4.006
 CZ
 CL
PHE C:13 C:13 128.0 0.61 S -118.8 -8.4 15.0 0.071 0.539 D:P10147:0.014
B:P10147:0.524
 CL
BGC
GLC
 3.884
5.430
8.875
 CZ
C
CZ
 CL
O6
O1
PHE D:13 D:13 134.0 0.638 S -129.2 -8.8 23.0 0.11 0.528 E:P10147:0.529
 CL
 4.048
 CZ
 CL
PHE E:13 E:13 144.0 0.686 S -125.5 -4.2 33.0 0.157 0.529 D:P10147:0.519
B:P10147:0.01
 BGC
CL
 4.329
3.847
 CB
CZ
 O3
CL
4zkb 2 P10147 97.06 1e-44 X-RAY
 2015-07-08 PHE B:12 B:12 178.0 0.848 S -99.2 -23.9 46.0 0.219 0.629 A:Q2F862:0.629
3kbx 1 P10147 92.86 3e-44 X-RAY
 2010-10-27 PHE A:13 A:13 145.0 0.69 S -123.0 -5.6 38.0 0.181 0.509 A:P10147:0.51
 K
ACT
K
HOH
 9.707
5.675
8.143
3.350
 CE1
O
CZ
CE1
 K
OXT
K
O
PHE B:13 B:13 147.0 0.7 S -119.7 -7.0 NA NA NA
PHE C:13 C:13 142.0 0.676 S -116.4 -18.9 NA NA NA
PHE D:13 D:13 152.0 0.724 S -118.5 -5.8 NA NA NA
PHE E:13 E:13 140.0 0.667 S -112.9 -8.3 NA NA NA
3fpu 2 P10147 95.59 5e-44 X-RAY
 2010-01-12 PHE B:13 B:13 147.0 0.7 S -106.7 -28.6 15.0 0.071 0.629 A:P0C8E7:0.629
 HOH
 2.887
 N
 O
2x6g 1 P10147 94.29 8e-44 X-RAY
 2010-11-03 PHE A:13 A:13 143.0 0.681 S -114.0 -14.0 NA NA NA
PHE B:13 B:13 149.0 0.71 S -108.0 -0.5 NA NA NA
PHE C:13 C:13 148.0 0.705 S -116.7 -8.0 NA NA NA
PHE D:13 D:13 147.0 0.7 S -106.5 -6.6 NA NA NA
PHE E:13 E:13 145.0 0.69 S -106.7 -8.3 NA NA NA
PHE F:13 F:13 143.0 0.681 S -105.2 -16.5 NA NA NA
PHE G:13 G:13 154.0 0.733 S -115.8 -10.7 NA NA NA
PHE H:13 H:13 142.0 0.676 S -114.3 -4.0 NA NA NA
PHE I:13 I:13 150.0 0.714 S -107.6 2.6 NA NA NA
PHE J:13 J:13 139.0 0.662 S -119.4 -0.7 NA NA NA
PHE K:13 K:13 139.0 0.662 S -93.6 9.5 NA NA NA
PHE L:13 L:13 127.0 0.605 S -111.2 -8.2 NA NA NA
PHE M:13 M:13 152.0 0.724 S -110.4 -11.8 NA NA NA
PHE N:13 N:13 141.0 0.671 S -108.3 9.3 NA NA NA
PHE O:13 O:13 151.0 0.719 S -111.2 -15.9 NA NA NA
PHE P:13 P:13 144.0 0.686 S -115.9 -16.9 NA NA NA
PHE Q:13 Q:13 145.0 0.69 S -111.7 -10.1 42.0 0.2 0.49 R:P10147:0.49
 HOH
 3.910
 CE1
 O
PHE R:13 R:13 155.0 0.738 S -137.0 -17.2 40.0 0.19 0.548 Q:P10147:0.548
 HOH
 2.840
 N
 O
1b50 1 P10147 95.59 2e-43 NMR
 1999-07-22 PHE A:12 A:12 153.0 0.729 S -98.7 -9.9 62.0 0.295 0.434 B:P10147:0.433
PHE B:12 B:12 155.0 0.738 S -98.7 -9.9 65.0 0.31 0.428 A:P10147:0.429
1b53 1 P10147 95.59 2e-43 NMR
 1999-07-22 PHE A:12 A:12 144.0 0.686 -90.8 -20.6 49.0 0.233 0.453 B:P10147:0.452
PHE B:12 B:12 146.0 0.695 -90.8 -20.6 47.0 0.224 0.471 A:P10147:0.471
4ra8 1 P10147 94.2 2e-43 X-RAY
 2014-09-24 PHE A:13 A:13 148.0 0.705 S -109.6 4.7 34.0 0.162 0.543 A:P10147:0.543
 HOH
 3.022
 N
 O
PHE B:13 B:13 144.0 0.686 S -112.1 -1.3 NA NA NA
PHE C:13 C:13 146.0 0.695 S -112.0 -8.5 NA NA NA
PHE D:13 D:13 138.0 0.657 S -124.5 -7.6 NA NA NA
PHE E:13 E:13 145.0 0.69 S -113.6 -8.0 NA NA NA
7f1q 1 P10147,P51681 95.59 2e-40 EM
 2021-07-14 PHE A:12 R:12 40.0 0.19 -116.9 -0.9 40.0 0.19 0.0
7f1t 1 P10147,P51681,P00268 95.59 7e-40 X-RAY
 2021-07-14 PHE A:12 A:-84 50.0 0.238 S -108.4 7.3 50.0 0.238 0.0

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p16619-f1 1 P16619 100.0 6e-65 PHE A:36 A:36 163.0 0.776 S -101.1 -19.0
af-p10147-f1 1 P10147 94.62 3e-59 PHE A:35 A:35 164.0 0.781 S -91.3 -25.7