Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr17 34624865 . C A CCDS11310.1:NM_021006.4:c.97Gcc>Tcc_NP_066286.1:p.33A>S Homo sapiens chemokine (C-C motif) ligand 3-like 1 (CCL3L1), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
2x69 1 P10147 95.71 5e-45 X-RAY
 2010-11-03 ALA A:10 A:10 47.0 0.409 -85.0 133.2 NA NA NA
ALA B:10 B:10 61.0 0.53 -82.7 127.1 42.0 0.365 0.165 C:P10147:0.165
 HOH
 4.853
 O
 O
ALA C:10 C:10 44.0 0.383 -72.5 129.9 27.0 0.235 0.148 B:P10147:0.148
 HOH
 7.117
 N
 O
ALA D:10 D:10 47.0 0.409 -68.0 128.9 NA NA NA
ALA E:10 E:10 62.0 0.539 -72.7 124.1 NA NA NA
3h44 2 P10147 95.71 5e-45 X-RAY
 2010-04-14 ALA C:10 NA:NA DO NA DO DO DO NA NA NA
ALA D:10 NA:NA DO NA DO DO DO NA NA NA
5cor 1 P10147 95.71 5e-45 X-RAY
 2016-04-13 ALA A:10 A:10 53.0 0.461 -78.2 128.1 53.0 0.461 0.0 HEZ
HOH
 9.853
2.879
 O
O
 O1
O
ALA B:10 B:10 54.0 0.47 -77.1 128.8 NA NA NA
ALA C:10 C:10 59.0 0.513 -74.4 127.7 59.0 0.513 0.0 HOH
 2.623
 O
 O
ALA D:10 D:10 54.0 0.47 -75.1 126.4 NA NA NA
ALA E:10 E:10 55.0 0.478 -73.2 127.9 55.0 0.478 0.0 HOH
 2.628
 O
 O
ALA F:10 F:10 56.0 0.487 -80.4 126.4 NA NA NA
ALA G:10 G:10 55.0 0.478 -79.5 124.9 55.0 0.478 0.0 ACT
HOH
 6.068
2.864
 CB
O
 CH3
O
ALA H:10 H:10 54.0 0.47 -78.4 128.4 NA NA NA
ALA I:10 I:10 56.0 0.487 -74.7 127.7 56.0 0.487 0.0 HOH
 2.654
 O
 O
ALA J:10 J:10 52.0 0.452 -78.2 132.8 NA NA NA
5d65 1 P10147 95.71 5e-45 X-RAY
 2016-04-20 ALA A:10 A:10 53.0 0.461 -76.3 123.8 25.0 0.217 0.244 C:P10147:0.243
ALA B:10 B:10 62.0 0.539 -74.6 123.4 4.0 0.035 0.504 C:P10147:0.139
D:P10147:0.296
A:P10147:0.226
 CL
BGC
 8.102
6.304
 C
N
 CL
O1
ALA C:10 C:10 47.0 0.409 -77.9 114.6 1.0 0.009 0.4 A:P10147:0.339
B:P10147:0.113
 CL
 8.260
 C
 CL
ALA D:10 D:10 62.0 0.539 -69.5 120.5 17.0 0.148 0.391 E:P10147:0.157
B:P10147:0.235
 BGC
CL
 7.944
8.305
 N
C
 O3
CL
ALA E:10 E:10 58.0 0.504 -75.5 109.8 43.0 0.374 0.13 D:P10147:0.13
 BGC
CL
 9.444
8.333
 C
C
 O3
CL
4zkb 2 P10147 97.06 1e-44 X-RAY
 2015-07-08 ALA B:9 B:9 64.0 0.557 -88.5 152.0 44.0 0.383 0.174 A:Q2F862:0.174
 NAG
NAG
 9.873
9.782
 CB
N
 O3
N2
3kbx 1 P10147 92.86 3e-44 X-RAY
 2010-10-27 ALA A:10 A:10 44.0 0.383 -76.6 135.2 28.0 0.243 0.14 A:P10147:0.139
 HOH
 2.517
 O
 O
ALA B:10 B:10 48.0 0.417 -71.5 134.1 NA NA NA
ALA C:10 C:10 41.0 0.357 -79.5 139.9 NA NA NA
ALA D:10 D:10 48.0 0.417 -79.3 127.0 NA NA NA
ALA E:10 E:10 45.0 0.391 -72.6 130.4 NA NA NA
3fpu 2 P10147 95.59 5e-44 X-RAY
 2010-01-12 THR B:10 B:10 59.0 0.421 -138.2 164.6 3.0 0.021 0.4 A:P0C8E7:0.4
 HOH
 2.741
 OG1
 O
2x6g 1 P10147 94.29 8e-44 X-RAY
 2010-11-03 ALA A:10 A:10 42.0 0.365 -81.3 135.4 NA NA NA
ALA B:10 B:10 60.0 0.522 -80.2 124.2 NA NA NA
ALA C:10 C:10 58.0 0.504 -74.5 130.4 NA NA NA
ALA D:10 D:10 46.0 0.4 -69.2 127.4 NA NA NA
ALA E:10 E:10 38.0 0.33 -73.7 133.0 NA NA NA
ALA F:10 F:10 56.0 0.487 -75.4 123.1 NA NA NA
ALA G:10 G:10 53.0 0.461 -79.8 120.6 NA NA NA
ALA H:10 H:10 64.0 0.557 -85.3 129.5 NA NA NA
ALA I:10 I:10 55.0 0.478 -74.7 123.7 NA NA NA
ALA J:10 J:10 61.0 0.53 -78.2 122.6 NA NA NA
ALA K:10 K:10 59.0 0.513 -81.3 138.3 NA NA NA
ALA L:10 L:10 55.0 0.478 -72.6 145.3 NA NA NA
ALA M:10 M:10 50.0 0.435 -86.0 137.2 NA NA NA
ALA N:10 N:10 44.0 0.383 -77.7 127.1 NA NA NA
ALA O:10 O:10 65.0 0.565 -79.9 126.5 NA NA NA
ALA P:10 P:10 58.0 0.504 -87.1 130.6 NA NA NA
ALA Q:10 Q:10 57.0 0.496 -82.5 124.5 35.0 0.304 0.192 R:P10147:0.191
 HOH
 2.685
 O
 O
ALA R:10 R:10 48.0 0.417 -62.0 143.8 31.0 0.27 0.147 Q:P10147:0.148
 HOH
 3.031
 N
 O
1b50 1 P10147 95.59 2e-43 NMR
 1999-07-22 ALA A:9 A:9 49.0 0.426 -68.2 126.3 27.0 0.235 0.191 B:P10147:0.191
ALA B:9 B:9 50.0 0.435 -68.2 126.3 28.0 0.243 0.192 A:P10147:0.191
1b53 1 P10147 95.59 2e-43 NMR
 1999-07-22 ALA A:9 A:9 37.0 0.322 -48.2 108.4 24.0 0.209 0.113 B:P10147:0.113
ALA B:9 B:9 37.0 0.322 -48.1 108.4 23.0 0.2 0.122 A:P10147:0.122
4ra8 1 P10147 94.2 2e-43 X-RAY
 2014-09-24 ALA A:10 A:10 43.0 0.374 -79.1 133.0 30.0 0.261 0.113 A:P10147:0.113
 HOH
 2.845
 O
 O
ALA B:10 B:10 55.0 0.478 -71.4 128.0 NA NA NA
ALA C:10 C:10 38.0 0.33 -83.0 122.6 NA NA NA
ALA D:10 D:10 40.0 0.348 -78.8 123.7 NA NA NA
ALA E:10 E:10 56.0 0.487 -79.7 133.6 NA NA NA
7f1q 1 P10147,P51681 95.59 2e-40 EM
 2021-07-14 ALA A:9 R:9 0.0 0.0 E -158.4 132.4 0.0 0.0 0.0
7f1t 1 P10147,P51681,P00268 95.59 7e-40 X-RAY
 2021-07-14 ALA A:9 A:-87 2.0 0.017 E -164.2 149.5 2.0 0.017 0.0

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p16619-f1 1 P16619 100.0 6e-65 ALA A:33 A:33 61.0 0.53 -73.1 119.1
af-p10147-f1 1 P10147 94.62 3e-59 ALA A:32 A:32 59.0 0.513 -74.8 123.7