Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr17 40280391 . G A CCDS11419.1:NM_004583.3:c.329gCa>gTa_NP_004574.2:p.110A>V Homo sapiens RAB5C, member RAS oncogene family (RAB5C), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
4kyi 2 P51148 98.22 5e-122 X-RAY
 2014-08-13 ALA B:98 B:110 41.0 0.357 H -68.2 -29.7 41.0 0.357 0.0
ALA D:98 D:110 45.0 0.391 H -69.4 -46.6 NA NA NA
ALA F:98 F:110 45.0 0.391 H -71.9 -33.6 NA NA NA
ALA H:98 H:110 43.0 0.374 H -73.0 -42.6 NA NA NA
4q9u 2 P20339 94.15 4e-121 X-RAY
 2014-07-23 ALA B:96 B:109 41.0 0.357 H -70.0 -43.1 41.0 0.357 0.0
ALA F:96 F:109 38.0 0.33 H -58.3 -47.2 38.0 0.33 0.0
1huq 1 P35278 100.0 4e-121 X-RAY
 2001-02-07 ALA A:92 A:110 48.0 0.417 H -63.1 -39.6 48.0 0.417 0.0 HOH
 2.746
 O
 O
1z0d 1 P35278 99.39 7e-121 X-RAY
 2005-07-26 ALA A:94 A:110 47.0 0.409 H -57.0 -43.5 47.0 0.409 0.0 HOH
 2.740
 O
 O
ALA B:94 C:110 45.0 0.391 H -55.8 -46.3 NA NA NA
1tu3 1 P20339 94.71 8e-121 X-RAY
 2004-10-05 ALA A:96 A:109 42.0 0.365 H -54.6 -39.1 42.0 0.365 0.0 HOH
 6.340
 C
 O
ALA B:96 B:109 45.0 0.391 H -66.8 -47.9 45.0 0.391 0.0 HOH
 3.723
 CB
 O
ALA C:96 C:109 53.0 0.461 H -63.3 -43.1 NA NA NA
ALA D:96 D:109 44.0 0.383 H -53.7 -56.5 NA NA NA
ALA E:96 E:109 52.0 0.452 H -66.7 -29.9 NA NA NA
1tu4 1 P20339 94.71 8e-121 X-RAY
 2004-10-05 ALA A:96 A:109 35.0 0.304 H -59.9 -42.7 35.0 0.304 0.0 HOH
 2.615
 O
 O
ALA B:96 B:109 33.0 0.287 H -55.6 -43.7 NA NA NA
ALA C:96 C:109 44.0 0.383 H -67.1 -47.2 NA NA NA
ALA D:96 D:109 44.0 0.383 H -56.4 -57.9 NA NA NA
1n6h 1 P20339 94.71 8e-121 X-RAY
 2002-11-27 ALA A:95 A:109 45.0 0.391 H -61.7 -40.4 45.0 0.391 0.0 HOH
 2.823
 O
 O
1r2q 1 P20339 94.71 8e-121 X-RAY
 2003-12-23 ALA A:95 A:109 45.0 0.391 H -57.0 -43.7 45.0 0.391 0.0 GOL
HOH
 3.653
5.116
 CB
O
 O1
O
2hei 1 P61020 89.89 4e-120 X-RAY
 2006-07-04 ALA A:97 A:109 53.0 0.461 H -53.1 -49.7 53.0 0.461 0.0 HOH
 2.544
 O
 O
ALA B:97 B:109 51.0 0.443 H -51.1 -40.3 51.0 0.443 0.0 HOH
 2.525
 O
 O
1n6p 1 P20339 94.12 4e-120 X-RAY
 2002-11-27 ALA A:95 A:109 48.0 0.417 H -60.9 -39.0 48.0 0.417 0.0 HOH
 2.769
 O
 O
1n6o 1 P20339 94.12 4e-120 X-RAY
 2002-11-27 ALA A:95 A:109 48.0 0.417 H -62.9 -39.5 48.0 0.417 0.0 HOH
 2.741
 O
 O
1n6r 1 P20339 94.12 5e-120 X-RAY
 2002-11-27 ALA A:95 A:109 45.0 0.391 H -62.3 -40.5 45.0 0.391 0.0 HOH
 3.657
 CB
 O
1n6n 1 P20339 94.12 6e-120 X-RAY
 2002-11-27 ALA A:95 A:109 45.0 0.391 H -62.4 -40.7 45.0 0.391 0.0 HOH
 3.614
 CB
 O
1z07 1 P35278 99.39 6e-120 X-RAY
 2005-07-26 ALA A:94 A:110 47.0 0.409 H -60.0 -43.9 47.0 0.409 0.0 HOH
 4.828
 CB
 O
1n6i 1 P20339 94.12 9e-120 X-RAY
 2002-11-27 ALA A:95 A:109 50.0 0.435 H -63.7 -40.5 50.0 0.435 0.0 HOH
 3.553
 CB
 O
1n6k 1 P20339 94.12 9e-120 X-RAY
 2002-11-27 ALA A:95 A:109 48.0 0.417 H -62.2 -41.2 48.0 0.417 0.0 HOH
 2.817
 O
 O
1n6l 1 P20339 94.12 9e-120 X-RAY
 2002-11-27 ALA A:95 A:109 45.0 0.391 H -62.4 -40.2 45.0 0.391 0.0 HOH
 3.449
 CB
 O
3mjh 1 P20339 94.05 5e-118 X-RAY
 2010-05-05 ALA A:94 A:109 46.0 0.4 H -65.5 -45.3 46.0 0.4 0.0 HOH
 2.704
 O
 O
ALA C:94 C:109 39.0 0.339 H -58.3 -44.3 NA NA NA
7bl1 6 P20339 92.86 8e-116 EM
 2021-03-03 ALA F:94 DDD:109 45.0 0.391 H -64.3 -44.5 45.0 0.391 0.0

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p51148-f1 1 P51148 100.0 3e-164 ALA A:110 A:110 49.0 0.426 H -58.1 -40.4
af-p20339-f1 1 P20339 87.04 2e-140 ALA A:109 A:109 48.0 0.417 H -58.8 -40.5
af-p61020-f1 1 P61020 86.12 8e-137 ALA A:109 A:109 54.0 0.47 H -58.5 -39.8