Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr17 40280806 . G A CCDS11419.1:NM_004583.3:c.179aCa>aTa_NP_004574.2:p.60T>I Homo sapiens RAB5C, member RAS oncogene family (RAB5C), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
4kyi 2 P51148 98.22 5e-122 X-RAY
 2014-08-13 THR B:48 B:60 67.0 0.479 E -137.1 118.0 34.0 0.243 0.236 A:Q5ZRP9:0.236
 EDO
EDO
 8.801
9.966
 N
OG1
 C2
O2
THR D:48 D:60 57.0 0.407 -164.9 123.8 NA NA NA
THR F:48 F:60 54.0 0.386 E -155.6 121.9 NA NA NA
THR H:48 H:60 67.0 0.479 E -144.5 134.6 NA NA NA
4q9u 2 P20339 94.15 4e-121 X-RAY
 2014-07-23 THR B:46 B:59 58.0 0.414 53.6 60.0 52.0 0.371 0.043 A:Q9UJ41:0.043
THR F:46 F:59 78.0 0.557 E -95.1 116.1 78.0 0.557 0.0
1huq 1 P35278 100.0 4e-121 X-RAY
 2001-02-07 THR A:42 A:60 57.0 0.407 E -128.1 152.2 57.0 0.407 0.0 HOH
 3.135
 OG1
 O
1z0d 1 P35278 99.39 7e-121 X-RAY
 2005-07-26 THR A:44 A:60 71.0 0.507 E -129.9 143.7 71.0 0.507 0.0 HOH
 2.676
 O
 O
THR B:44 C:60 92.0 0.657 E -116.3 143.3 NA NA NA
1tu3 1 P20339 94.71 8e-121 X-RAY
 2004-10-05 THR A:46 A:59 60.0 0.429 E -118.5 162.3 4.0 0.029 0.4 F:Q15276:0.4
 HOH
 2.793
 O
 O
THR B:46 B:59 60.0 0.429 E -122.6 164.8 6.0 0.043 0.386 G:Q15276:0.386
 HOH
 6.244
 N
 O
THR C:46 C:59 56.0 0.4 -109.3 178.8 NA NA NA
THR D:46 D:59 79.0 0.564 -114.0 151.0 NA NA NA
THR E:46 E:59 56.0 0.4 E -123.4 149.1 NA NA NA
1tu4 1 P20339 94.71 8e-121 X-RAY
 2004-10-05 THR A:46 A:59 14.0 0.1 E -116.9 150.6 14.0 0.1 0.0 HOH
 2.792
 OG1
 O
THR B:46 B:59 62.0 0.443 E -131.2 132.6 NA NA NA
THR C:46 C:59 12.0 0.086 E -115.5 144.2 NA NA NA
THR D:46 D:59 17.0 0.121 E -149.4 142.1 NA NA NA
1n6h 1 P20339 94.71 8e-121 X-RAY
 2002-11-27 THR A:45 A:59 61.0 0.436 E -134.1 153.6 61.0 0.436 0.0 HOH
 3.205
 N
 O
1r2q 1 P20339 94.71 8e-121 X-RAY
 2003-12-23 THR A:45 A:59 57.0 0.407 E -131.4 147.4 57.0 0.407 0.0 HOH
 2.979
 N
 O
2hei 1 P61020 89.89 4e-120 X-RAY
 2006-07-04 THR A:47 A:59 65.0 0.464 E -119.5 143.7 65.0 0.464 0.0 HOH
 3.792
 CG2
 O
THR B:47 B:59 63.0 0.45 E -119.7 143.7 63.0 0.45 0.0 HOH
 4.120
 CG2
 O
1n6p 1 P20339 94.12 4e-120 X-RAY
 2002-11-27 THR A:45 A:59 60.0 0.429 E -136.1 151.3 60.0 0.429 0.0 HOH
 3.123
 N
 O
1n6o 1 P20339 94.12 4e-120 X-RAY
 2002-11-27 THR A:45 A:59 57.0 0.407 E -130.8 154.3 57.0 0.407 0.0 HOH
 3.293
 OG1
 O
1n6r 1 P20339 94.12 5e-120 X-RAY
 2002-11-27 THR A:45 A:59 57.0 0.407 E -131.0 154.4 57.0 0.407 0.0 HOH
 3.154
 OG1
 O
1n6n 1 P20339 94.12 6e-120 X-RAY
 2002-11-27 THR A:45 A:59 58.0 0.414 E -134.0 154.5 58.0 0.414 0.0 HOH
 2.830
 O
 O
1z07 1 P35278 99.39 6e-120 X-RAY
 2005-07-26 THR A:44 A:60 58.0 0.414 E -133.1 148.1 58.0 0.414 0.0 HOH
 3.041
 O
 O
1n6i 1 P20339 94.12 9e-120 X-RAY
 2002-11-27 THR A:45 A:59 59.0 0.421 E -136.2 153.1 59.0 0.421 0.0 HOH
 2.802
 O
 O
1n6k 1 P20339 94.12 9e-120 X-RAY
 2002-11-27 THR A:45 A:59 59.0 0.421 E -131.3 154.0 59.0 0.421 0.0 HOH
 2.808
 O
 O
1n6l 1 P20339 94.12 9e-120 X-RAY
 2002-11-27 THR A:45 A:59 59.0 0.421 E -133.2 154.2 59.0 0.421 0.0 HOH
 3.139
 N
 O
3mjh 1 P20339 94.05 5e-118 X-RAY
 2010-05-05 THR A:44 A:59 62.0 0.443 E -144.1 147.2 62.0 0.443 0.0 HOH
 2.923
 N
 O
THR C:44 C:59 50.0 0.357 E -135.8 142.5 NA NA NA
7bl1 6 P20339 92.86 8e-116 EM
 2021-03-03 THR F:44 DDD:59 59.0 0.421 E -143.0 144.5 59.0 0.421 0.0

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p51148-f1 1 P51148 100.0 3e-164 THR A:60 A:60 61.0 0.436 E -126.0 140.1
af-p20339-f1 1 P20339 87.04 2e-140 THR A:59 A:59 62.0 0.443 E -126.4 140.1
af-p61020-f1 1 P61020 86.12 8e-137 THR A:59 A:59 59.0 0.421 E -125.7 139.9