Variant
Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr17 | 4836113 | . | C | A | CCDS54068.1:NM_000173.5:c.214Cgc>Agc_NP_000164.5:p.72R>S | Homo sapiens glycoprotein Ib (platelet), alpha polypeptide (GP1BA), mRNA. |
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PDB
Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
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PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
6xfq | 1 | P07359 | 99.34 | 0.0 |
X-RAY |
2021-06-23 | ARG | A:56 | G:56 | 120.0 | 0.533 | T | -99.8 | 1.5 | 120.0 | 0.533 | 0.0 | ||||||
1ook | 4 | P07359 | 99.66 | 0.0 |
X-RAY |
2003-07-22 | ARG | D:56 | G:56 | 124.0 | 0.551 | T | -115.7 | 16.6 | 124.0 | 0.551 | 0.0 |
HOH |
2.780 |
N |
O |
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1p9a | 1 | P07359 | 99.66 | 0.0 |
X-RAY |
2003-07-22 | ARG | A:56 | G:56 | 142.0 | 0.631 | T | -106.6 | 5.7 | 142.0 | 0.631 | 0.0 |
HOH |
2.712 |
O |
O |
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1qyy | 1 | P07359 | 99.66 | 0.0 |
X-RAY |
2004-03-02 | ARG | A:56 | A:56 | 151.0 | 0.671 | T | -109.0 | 4.4 | 151.0 | 0.671 | 0.0 | ||||||
ARG | B:56 | G:56 | 119.0 | 0.529 | T | -101.7 | 4.9 | NA | NA | NA | |||||||||||||
3pmh | 3 | P07359 | 99.66 | 0.0 |
X-RAY |
2011-06-01 | ARG | C:56 | G:56 | 75.0 | 0.333 | T | -113.0 | 21.5 | 75.0 | 0.333 | 0.0 | ||||||
1m0z | 1 | P07359 | 99.31 | 0.0 |
X-RAY |
2002-08-28 | ARG | A:56 | A:56 | 142.0 | 0.631 | T | -111.3 | 6.8 | 142.0 | 0.631 | 0.0 |
HOH |
2.831 |
O |
O |
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ARG | B:56 | B:56 | 143.0 | 0.636 | T | -106.0 | 2.7 | NA | NA | NA | |||||||||||||
1m10 | 2 | P07359 | 98.97 | 0.0 |
X-RAY |
2002-08-28 | ARG | B:56 | B:56 | 140.0 | 0.622 | T | -112.0 | -8.4 | 140.0 | 0.622 | 0.0 | ||||||
1sq0 | 2 | P07359 | 99.31 | 0.0 |
X-RAY |
2004-04-13 | ARG | B:56 | B:56 | 131.0 | 0.582 | T | -118.2 | -5.1 | 131.0 | 0.582 | 0.0 |
HOH |
2.536 |
NH2 |
O |
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4c2a | 2 | P07359 | 98.28 | 0.0 |
X-RAY |
2014-01-08 | ARG | B:56 | B:56 | 136.0 | 0.604 | T | -115.1 | 9.5 | 136.0 | 0.604 | 0.0 |
HOH |
2.677 |
O |
O |
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4c2b | 2 | P07359 | 98.28 | 0.0 |
X-RAY |
2014-01-08 | ARG | B:56 | B:56 | 123.0 | 0.547 | T | -103.4 | -11.4 | 123.0 | 0.547 | 0.0 | ||||||
ARG | D:56 | D:56 | 144.0 | 0.64 | T | -101.1 | -1.0 | NA | NA | NA | |||||||||||||
ARG | F:56 | F:56 | 113.0 | 0.502 | T | -103.0 | -8.6 | NA | NA | NA | |||||||||||||
ARG | H:56 | H:56 | 139.0 | 0.618 | T | -103.9 | -11.1 | NA | NA | NA | |||||||||||||
1gwb | 1 | P07359 | 100.0 | 0.0 |
X-RAY |
2003-02-06 | ARG | A:57 | A:72 | 150.0 | 0.667 | T | -93.2 | -3.6 | 150.0 | 0.667 | 0.0 |
HOH |
9.958 |
O |
O |
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ARG | B:57 | B:72 | 145.0 | 0.644 | T | -101.9 | 19.0 | NA | NA | NA | |||||||||||||
1p8v | 1 | P07359 | 99.64 | 0.0 |
X-RAY |
2003-07-22 | ARG | A:56 | A:56 | 111.0 | 0.493 | T | -111.6 | 4.1 | 111.0 | 0.493 | 0.0 |
HOH |
2.854 |
N |
O |
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1u0n | 4 | P07359 | 99.25 | 0.0 |
X-RAY |
2005-04-19 | ARG | D:56 | D:56 | 125.0 | 0.556 | T | 161.5 | 16.3 | 125.0 | 0.556 | 0.0 | ||||||
3p72 | 1 | P07359 | 99.25 | 0.0 |
X-RAY |
2010-11-24 | ARG | A:56 | A:56 | 121.0 | 0.538 | T | -104.3 | 4.9 | 121.0 | 0.538 | 0.0 |
HOH |
2.507 |
O |
O |
AlphaFold DB
Entity | Residue | Monomer | View | ||||||||||
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ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
af-p07359-f1 | 1 | P07359 | 100.0 | 0.0 | ARG | A:72 | A:72 | 139.0 | 0.618 | T | -103.9 | 5.2 |