Variant
Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr17 | 4836644 | . | G | A | CCDS54068.1:NM_000173.5:c.745Ggt>Agt_NP_000164.5:p.249G>S | Homo sapiens glycoprotein Ib (platelet), alpha polypeptide (GP1BA), mRNA. |
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PDB
Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
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PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
6xfq | 1 | P07359 | 99.34 | 0.0 |
X-RAY |
2021-06-23 | GLY | A:233 | G:233 | 87.0 | 1.0 | S | -102.5 | 36.6 | 87.0 | 1.0 | 0.0 | ||||||
1ook | 4 | P07359 | 99.66 | 0.0 |
X-RAY |
2003-07-22 | GLY | D:233 | G:233 | 40.0 | 0.533 | S | -87.3 | 164.8 | 40.0 | 0.533 | 0.0 |
HOH |
7.118 |
CA |
O |
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1p9a | 1 | P07359 | 99.66 | 0.0 |
X-RAY |
2003-07-22 | GLY | A:233 | G:233 | 71.0 | 0.947 | T | 74.7 | 7.6 | 71.0 | 0.947 | 0.0 |
HOH |
3.875 |
CA |
O |
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1qyy | 1 | P07359 | 99.66 | 0.0 |
X-RAY |
2004-03-02 | GLY | A:233 | A:233 | 51.0 | 0.68 | S | 89.5 | 18.1 | 51.0 | 0.68 | 0.0 |
PT HOH |
8.912 8.933 |
N N |
PT O |
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GLY | B:233 | G:233 | 53.0 | 0.707 | S | 94.7 | 25.9 | NA | NA | NA | |||||||||||||
3pmh | 3 | P07359 | 99.66 | 0.0 |
X-RAY |
2011-06-01 | GLY | C:233 | G:233 | 41.0 | 0.547 | T | -71.5 | 169.8 | 41.0 | 0.547 | 0.0 | ||||||
1m0z | 1 | P07359 | 99.31 | 0.0 |
X-RAY |
2002-08-28 | GLY | A:233 | A:233 | 64.0 | 0.853 | -177.3 | -100.0 | 64.0 | 0.853 | 0.0 |
HOH |
3.566 |
C |
O |
|||
GLY | B:233 | B:233 | 91.0 | 1.0 | T | 81.7 | -7.5 | NA | NA | NA | |||||||||||||
1m10 | 2 | P07359 | 98.97 | 0.0 |
X-RAY |
2002-08-28 | GLY | B:233 | B:233 | 38.0 | 0.507 | -136.9 | 46.2 | 38.0 | 0.507 | 0.0 | |||||||
1sq0 | 2 | P07359 | 99.31 | 0.0 |
X-RAY |
2004-04-13 | GLY | B:233 | B:233 | 31.0 | 0.413 | -157.4 | -172.1 | 31.0 | 0.413 | 0.0 |
HOH |
2.722 |
O |
O |
|||
4c2a | 2 | P07359 | 98.28 | 0.0 |
X-RAY |
2014-01-08 | VAL | B:233 | B:233 | 83.0 | 0.535 | E | -111.2 | 125.8 | 79.0 | 0.51 | 0.025 |
A:P04275:0.026 |
HOH |
4.606 |
CB |
O |
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4c2b | 2 | P07359 | 98.28 | 0.0 |
X-RAY |
2014-01-08 | VAL | B:233 | B:233 | 91.0 | 0.587 | E | -120.8 | 126.3 | 91.0 | 0.587 | 0.0 |
HOH |
3.354 |
CG2 |
O |
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VAL | D:233 | D:233 | 81.0 | 0.523 | E | -128.6 | 123.9 | NA | NA | NA | |||||||||||||
VAL | F:233 | F:233 | 88.0 | 0.568 | E | -122.7 | 118.0 | NA | NA | NA | |||||||||||||
VAL | H:233 | H:233 | 98.0 | 0.632 | E | -114.7 | 116.9 | NA | NA | NA | |||||||||||||
1gwb | 1 | P07359 | 100.0 | 0.0 |
X-RAY |
2003-02-06 | GLY | A:234 | A:249 | 75.0 | 1.0 | S | -104.2 | 24.7 | 75.0 | 1.0 | 0.0 |
PT HOH |
6.754 7.745 |
C N |
PT O |
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GLY | B:234 | B:249 | 73.0 | 0.973 | S | -67.9 | 65.6 | NA | NA | NA | |||||||||||||
1p8v | 1 | P07359 | 99.64 | 0.0 |
X-RAY |
2003-07-22 | GLY | A:233 | A:233 | 80.0 | 1.0 | T | 81.9 | 20.1 | 80.0 | 1.0 | 0.0 |
HOH |
6.035 |
N |
O |
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1u0n | 4 | P07359 | 99.25 | 0.0 |
X-RAY |
2005-04-19 | GLY | D:233 | D:233 | 30.0 | 0.4 | -176.7 | 48.4 | 30.0 | 0.4 | 0.0 | |||||||
3p72 | 1 | P07359 | 99.25 | 0.0 |
X-RAY |
2010-11-24 | GLY | A:233 | A:233 | 89.0 | 1.0 | T | 80.1 | 3.2 | 60.0 | 0.8 | 0.2 |
B:None:0.387 |
HOH |
3.320 |
N |
O |
AlphaFold DB
Entity | Residue | Monomer | View | ||||||||||
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ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
af-p07359-f1 | 1 | P07359 | 100.0 | 0.0 | GLY | A:249 | A:249 | 86.0 | 1.0 | T | 78.8 | 7.2 |