Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr17 49233032 . G A CCDS11578.1:NM_198175.1:c.92cGt>cAt_NP_937818.1:p.31R>H Homo sapiens NME/NM23 nucleoside diphosphate kinase 1 (NME1), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
3l7u 1 P15531 100.0 6e-113 X-RAY
 2010-11-10 ARG A:26 A:6 67.0 0.298 E -128.8 147.3 67.0 0.298 0.0 HOH
 2.760
 NH1
 O
ARG B:26 B:6 55.0 0.244 E -123.6 147.4 55.0 0.244 0.0 HOH
 3.130
 O
 O
ARG C:26 C:6 44.0 0.196 E -127.0 146.1 44.0 0.196 0.0 HOH
 2.715
 O
 O
1jxv 1 P15531 100.0 6e-113 X-RAY
 2002-04-10 ARG A:6 A:6 45.0 0.2 E -135.5 145.0 45.0 0.2 0.0 HOH
 6.694
 O
 O
ARG B:6 B:6 41.0 0.182 E -135.6 143.7 41.0 0.182 0.0 HOH
 6.675
 N
 O
ARG C:6 C:6 41.0 0.182 E -136.4 145.1 41.0 0.182 0.0 HOH
 2.665
 NH2
 O
ARG D:6 D:6 41.0 0.182 E -134.2 145.1 41.0 0.182 0.0 HOH
 3.013
 O
 O
ARG E:6 E:6 41.0 0.182 E -135.7 145.6 41.0 0.182 0.0 HOH
 6.382
 N
 O
ARG F:6 F:6 42.0 0.187 E -135.1 145.5 42.0 0.187 0.0 HOH
 2.807
 NH2
 O
2hvd 1 P15531 100.0 6e-113 X-RAY
 2006-09-19 ARG A:6 A:6 68.0 0.302 E -123.4 159.1 68.0 0.302 0.0 HOH
 3.256
 NH2
 O
ARG B:6 B:6 70.0 0.311 E -123.9 157.4 70.0 0.311 0.0 HOH
 2.924
 O
 O
ARG C:6 C:6 72.0 0.32 E -114.7 152.2 72.0 0.32 0.0 HOH
 3.108
 NH1
 O
4eno 1 P15531 100.0 6e-113 X-RAY
 2013-03-27 ARG A:6 A:6 10.0 0.044 E -133.4 149.2 10.0 0.044 0.0 HOH
 5.724
 N
 O
ARG B:6 B:6 13.0 0.058 E -119.8 150.4 13.0 0.058 0.0 HOH
 7.103
 NH1
 O
5ui4 1 P15531 100.0 7e-113 X-RAY
 2018-01-17 ARG A:13 A:6 62.0 0.276 E -128.3 149.3 62.0 0.276 0.0 HOH
 6.785
 O
 O
ARG B:13 B:6 69.0 0.307 E -129.0 145.2 69.0 0.307 0.0 HOH
 6.721
 N
 O
ARG C:13 C:6 72.0 0.32 E -119.4 150.3 72.0 0.32 0.0 HOH
 6.797
 N
 O
ARG D:13 D:6 52.0 0.231 E -134.6 138.0 52.0 0.231 0.0 HOH
 3.116
 CD
 O
ARG E:13 E:6 55.0 0.244 E -136.9 144.4 55.0 0.244 0.0 HOH
 6.993
 O
 O
ARG F:13 F:6 69.0 0.307 E -120.2 150.7 69.0 0.307 0.0 HOH
 6.338
 N
 O
2hve 1 P15531 99.34 4e-112 X-RAY
 2006-09-19 ARG A:6 A:6 64.0 0.284 E -122.6 160.7 64.0 0.284 0.0 HOH
 7.137
 NH2
 O
ARG B:6 B:6 71.0 0.316 E -123.2 156.1 71.0 0.316 0.0 HOH
 2.844
 O
 O
ARG C:6 C:6 73.0 0.324 E -126.8 153.0 73.0 0.324 0.0 HOH
 5.360
 N
 O
1ucn 1 P15531 98.68 2e-110 X-RAY
 2003-09-30 ARG A:6 A:6 59.0 0.262 E -121.7 175.5 59.0 0.262 0.0 HOH
 5.615
 NH2
 O
ARG B:6 B:6 68.0 0.302 E -126.7 157.2 68.0 0.302 0.0 HOH
 2.806
 N
 O
ARG C:6 C:6 65.0 0.289 E -127.3 155.4 65.0 0.289 0.0 HOH
 2.835
 O
 O
1bhn 1 P52174 94.08 8e-108 X-RAY
 1999-02-16 ARG A:6 A:6 59.0 0.262 E -119.4 156.4 59.0 0.262 0.0 HOH
 2.236
 NH2
 O
ARG B:6 B:6 94.0 0.418 E -142.0 145.4 94.0 0.418 0.0 HOH
 2.513
 NE
 O
ARG C:6 C:6 70.0 0.311 E -110.9 158.1 70.0 0.311 0.0 HOH
 2.577
 O
 O
ARG D:6 D:6 67.0 0.298 E -142.9 161.4 67.0 0.298 0.0 HOH
 2.501
 NH1
 O
ARG E:6 E:6 62.0 0.276 E -147.9 156.6 62.0 0.276 0.0 HOH
 3.929
 NE
 O
ARG F:6 F:6 95.0 0.422 E -111.5 150.1 95.0 0.422 0.0 HOH
 4.714
 NH2
 O
1be4 1 P52175 93.38 2e-105 X-RAY
 1999-01-13 ARG A:5 A:6 61.0 0.271 E -116.9 164.3 61.0 0.271 0.0 HOH
 3.127
 N
 O
ARG B:5 B:6 59.0 0.262 E -134.6 140.2 59.0 0.262 0.0 HOH
 2.592
 NH1
 O
ARG C:5 C:6 77.0 0.342 E -126.4 170.1 77.0 0.342 0.0 HOH
 3.422
 O
 O
1nsk 1 P22392 88.16 4e-100 X-RAY
 1995-10-15 ARG A:6 R:6 65.0 0.289 176.1 144.1 65.0 0.289 0.0
ARG B:6 L:6 66.0 0.293 E -179.4 141.5 66.0 0.293 0.0
ARG C:6 T:6 65.0 0.289 176.0 146.3 65.0 0.289 0.0
ARG D:6 U:6 71.0 0.316 E -160.2 136.1 71.0 0.316 0.0
ARG E:6 N:6 70.0 0.311 -177.7 146.3 70.0 0.311 0.0
ARG F:6 O:6 70.0 0.311 E -172.1 134.3 70.0 0.311 0.0
7kpf 1 P22392 88.16 4e-100 X-RAY
 2022-02-02 ARG A:6 A:6 53.0 0.236 E -126.5 147.7 53.0 0.236 0.0 HOH
 1.865
 HH22
 O
ARG B:6 B:6 54.0 0.24 E -126.0 148.0 54.0 0.24 0.0 HOH
 6.656
 O
 O
ARG C:6 C:6 44.0 0.196 E -129.5 150.6 44.0 0.196 0.0 HOH
 1.910
 HH11
 O
ARG D:6 D:6 58.0 0.258 E -127.8 151.6 58.0 0.258 0.0 HOH
 2.195
 H
 O
ARG E:6 E:6 65.0 0.289 E -127.5 148.4 65.0 0.289 0.0 HOH
 2.717
 HE
 O
ARG F:6 F:6 64.0 0.284 E -129.3 150.5 64.0 0.284 0.0 HOH
 2.511
 H
 O
1nue 1 P22392 88.08 4e-99 X-RAY
 1996-04-03 ARG A:5 A:6 47.0 0.209 E -132.4 154.3 47.0 0.209 0.0 HOH
 2.837
 O
 O
ARG B:5 B:6 35.0 0.156 E -131.4 155.3 35.0 0.156 0.0 HOH
 2.920
 NE
 O
ARG C:5 C:6 40.0 0.178 E -131.1 150.7 40.0 0.178 0.0 HOH
 2.809
 O
 O
ARG D:5 D:6 37.0 0.164 E -132.1 150.2 37.0 0.164 0.0 HOH
 2.601
 O
 O
ARG E:5 E:6 28.0 0.124 E -135.3 155.5 28.0 0.124 0.0 HOH
 2.859
 O
 O
ARG F:5 F:6 34.0 0.151 E -128.7 149.5 34.0 0.151 0.0 HOH
 3.325
 NE
 O
3bbb 1 P22392 88.08 4e-99 X-RAY
 2008-09-23 ARG A:5 A:6 61.0 0.271 E -128.0 151.2 61.0 0.271 0.0 HOH
 2.822
 NH1
 O
ARG B:5 B:6 41.0 0.182 E -129.2 153.3 41.0 0.182 0.0 HOH
 2.652
 CD
 O
ARG C:5 C:6 56.0 0.249 E -127.2 146.4 56.0 0.249 0.0 HOH
 2.615
 O
 O
ARG D:5 D:6 61.0 0.271 E -127.7 154.8 61.0 0.271 0.0 HOH
 2.922
 O
 O
ARG E:5 E:6 53.0 0.236 E -125.9 147.6 53.0 0.236 0.0 HOH
 2.220
 NH2
 O
ARG F:5 F:6 41.0 0.182 E -127.4 150.9 41.0 0.182 0.0 HOH
 2.704
 NH1
 O
3bbf 1 P22392 88.08 4e-99 X-RAY
 2008-09-23 ARG A:5 A:6 70.0 0.311 E -126.6 152.1 70.0 0.311 0.0 HOH
 2.764
 O
 O
ARG B:5 B:6 47.0 0.209 E -127.0 150.7 47.0 0.209 0.0 HOH
 2.788
 NH1
 O
ARG C:5 C:6 59.0 0.262 E -135.3 154.5 59.0 0.262 0.0 HOH
 2.821
 O
 O
ARG D:5 D:6 40.0 0.178 E -124.4 152.5 40.0 0.178 0.0 HOH
 2.556
 NE
 O
ARG E:5 E:6 69.0 0.307 E -127.6 154.8 69.0 0.307 0.0 HOH
 2.706
 O
 O
ARG F:5 F:6 64.0 0.284 E -133.0 156.2 64.0 0.284 0.0 HOH
 2.781
 CD
 O
3bbc 1 P22392 87.42 3e-98 X-RAY
 2008-09-23 ARG A:5 A:6 70.0 0.311 E -128.3 145.6 70.0 0.311 0.0 HOH
 2.784
 O
 O
ARG B:5 B:6 74.0 0.329 E -121.4 150.2 74.0 0.329 0.0 HOH
 2.758
 O
 O
ARG C:5 C:6 63.0 0.28 E -124.1 152.8 63.0 0.28 0.0 HOH
 2.740
 NH1
 O
ARG D:5 D:6 71.0 0.316 E -129.7 152.2 71.0 0.316 0.0 HOH
 2.763
 O
 O
ARG E:5 E:6 67.0 0.298 E -125.5 147.5 67.0 0.298 0.0 HOH
 2.760
 O
 O
ARG F:5 F:6 63.0 0.28 E -125.6 148.7 63.0 0.28 0.0 HOH
 2.713
 O
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p15531-f1 1 P15531 100.0 3e-113 ARG A:6 A:6 72.0 0.32 E -122.4 148.5
af-p22392-f1 1 P22392 88.16 2e-100 ARG A:6 A:6 75.0 0.333 E -120.3 146.2