Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr17 49239138 . G A CCDS11578.1:NM_198175.1:c.466Ggc>Agc_NP_937818.1:p.156G>S Homo sapiens NME/NM23 nucleoside diphosphate kinase 1 (NME1), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
3l7u 1 P15531 100.0 6e-113 X-RAY
 2010-11-10 GLY A:151 A:131 57.0 0.76 H -64.8 -31.6 57.0 0.76 0.0 HOH
 3.842
 C
 O
GLY B:151 B:131 58.0 0.773 H -63.6 -35.6 58.0 0.773 0.0 HOH
 2.677
 O
 O
GLY C:151 C:131 57.0 0.76 H -65.1 -26.7 57.0 0.76 0.0 HOH
 3.111
 O
 O
1jxv 1 P15531 100.0 6e-113 X-RAY
 2002-04-10 GLY A:131 A:131 57.0 0.76 H -70.6 -34.8 57.0 0.76 0.0
GLY B:131 B:131 59.0 0.787 H -71.6 -35.0 59.0 0.787 0.0 HOH
 4.015
 CA
 O
GLY C:131 C:131 57.0 0.76 H -71.9 -33.7 57.0 0.76 0.0 HOH
 6.982
 N
 O
GLY D:131 D:131 57.0 0.76 H -71.0 -33.2 57.0 0.76 0.0 HOH
 9.899
 N
 O
GLY E:131 E:131 56.0 0.747 H -72.0 -34.3 56.0 0.747 0.0
GLY F:131 F:131 56.0 0.747 H -70.8 -33.9 56.0 0.747 0.0 HOH
 2.585
 O
 O
2hvd 1 P15531 100.0 6e-113 X-RAY
 2006-09-19 GLY A:131 A:131 45.0 0.6 H -68.5 -29.4 45.0 0.6 0.0 HOH
 9.801
 N
 O
GLY B:131 B:131 58.0 0.773 H -66.5 -29.2 58.0 0.773 0.0 HOH
 2.876
 O
 O
GLY C:131 C:131 60.0 0.8 H -66.7 -31.8 60.0 0.8 0.0 HOH
 5.196
 O
 O
4eno 1 P15531 100.0 6e-113 X-RAY
 2013-03-27 GLY A:131 A:131 50.0 0.667 H -52.2 -49.1 50.0 0.667 0.0 HOH
 3.277
 CA
 O
GLY B:131 B:131 53.0 0.707 H -67.3 -27.4 53.0 0.707 0.0 HOH
 2.709
 O
 O
5ui4 1 P15531 100.0 7e-113 X-RAY
 2018-01-17 GLY A:138 A:131 57.0 0.76 H -56.8 -36.0 57.0 0.76 0.0 HOH
 4.729
 O
 O
GLY B:138 B:131 57.0 0.76 H -56.6 -36.0 57.0 0.76 0.0 HOH
 3.907
 O
 O
GLY C:138 C:131 57.0 0.76 H -56.1 -36.3 57.0 0.76 0.0 HOH
 4.979
 O
 O
GLY D:138 D:131 56.0 0.747 H -56.5 -36.1 56.0 0.747 0.0 HOH
 6.314
 N
 O
GLY E:138 E:131 56.0 0.747 H -56.0 -36.2 56.0 0.747 0.0
GLY F:138 F:131 57.0 0.76 H -56.3 -35.9 57.0 0.76 0.0 HOH
 4.436
 O
 O
2hve 1 P15531 99.34 4e-112 X-RAY
 2006-09-19 GLY A:131 A:131 50.0 0.667 H -59.6 -48.9 50.0 0.667 0.0 HOH
 5.026
 CA
 O
GLY B:131 B:131 58.0 0.773 H -62.0 -28.3 58.0 0.773 0.0 HOH
 9.446
 N
 O
GLY C:131 C:131 61.0 0.813 H -58.3 -33.2 61.0 0.813 0.0 HOH
 5.193
 O
 O
1ucn 1 P15531 98.68 2e-110 X-RAY
 2003-09-30 GLY A:131 A:131 54.0 0.72 H -59.6 -36.9 54.0 0.72 0.0 HOH
 2.671
 O
 O
GLY B:131 B:131 57.0 0.76 H -64.9 -26.7 57.0 0.76 0.0 CA
HOH
 2.593
2.952
 O
O
 CA
O
GLY C:131 C:131 59.0 0.787 H -71.5 -28.1 59.0 0.787 0.0 CA
HOH
 2.815
2.606
 O
O
 CA
O
1bhn 1 P52174 94.08 8e-108 X-RAY
 1999-02-16 ALA A:131 A:131 63.0 0.548 H -31.7 -42.5 63.0 0.548 0.0 HOH
 2.822
 CA
 O
ALA B:131 B:131 73.0 0.635 H -44.8 -43.8 73.0 0.635 0.0 HOH
 3.006
 O
 O
ALA C:131 C:131 66.0 0.574 H -74.7 -31.0 66.0 0.574 0.0 HOH
 2.485
 O
 O
ALA D:131 D:131 62.0 0.539 H -61.0 -67.9 62.0 0.539 0.0 HOH
 3.691
 O
 O
ALA E:131 E:131 60.0 0.522 H -56.0 -63.3 60.0 0.522 0.0 HOH
 3.923
 O
 O
ALA F:131 F:131 78.0 0.678 H -43.6 -51.8 78.0 0.678 0.0 HOH
 2.731
 O
 O
1be4 1 P52175 93.38 2e-105 X-RAY
 1999-01-13 ALA A:130 A:131 63.0 0.548 H -55.1 -54.3 63.0 0.548 0.0 HOH
 2.246
 O
 O
ALA B:130 B:131 71.0 0.617 H -56.5 -50.9 71.0 0.617 0.0 HOH
 5.241
 O
 O
ALA C:130 C:131 72.0 0.626 H -52.9 -44.4 72.0 0.626 0.0 HOH
 3.039
 O
 O
1nsk 1 P22392 88.16 4e-100 X-RAY
 1995-10-15 SER A:131 R:131 91.0 0.791 H -67.9 -42.2 91.0 0.791 0.0
SER B:131 L:131 89.0 0.774 H -68.2 -41.9 89.0 0.774 0.0
SER C:131 T:131 87.0 0.757 H -71.0 -40.0 87.0 0.757 0.0
SER D:131 U:131 91.0 0.791 H -70.3 -39.5 91.0 0.791 0.0
SER E:131 N:131 90.0 0.783 H -70.9 -39.2 90.0 0.783 0.0
SER F:131 O:131 90.0 0.783 H -71.1 -39.6 90.0 0.783 0.0
7kpf 1 P22392 88.16 4e-100 X-RAY
 2022-02-02 SER A:131 A:131 69.0 0.6 H -67.1 -34.9 69.0 0.6 0.0 HOH
 8.864
 HG
 O
SER B:131 B:131 80.0 0.696 H -66.3 -34.3 80.0 0.696 0.0
SER C:131 C:131 75.0 0.652 H -65.3 -34.9 75.0 0.652 0.0 HOH
 6.548
 HG
 O
SER D:131 D:131 94.0 0.817 H -58.7 -40.4 94.0 0.817 0.0 HOH
 9.145
 HG
 O
SER E:131 E:131 93.0 0.809 H -61.3 -39.3 93.0 0.809 0.0 HOH
 2.061
 HG
 O
SER F:131 F:131 94.0 0.817 H -60.6 -39.2 94.0 0.817 0.0 HOH
 8.965
 HG
 O
1nue 1 P22392 88.08 4e-99 X-RAY
 1996-04-03 SER A:130 A:131 92.0 0.8 H -66.3 -34.1 92.0 0.8 0.0 HOH
 2.813
 OG
 O
SER B:130 B:131 92.0 0.8 H -65.9 -35.2 92.0 0.8 0.0 HOH
 2.930
 O
 O
SER C:130 C:131 88.0 0.765 H -63.5 -34.7 88.0 0.765 0.0 HOH
 2.977
 OG
 O
SER D:130 D:131 88.0 0.765 H -66.0 -32.0 88.0 0.765 0.0 HOH
 5.353
 O
 O
SER E:130 E:131 89.0 0.774 H -65.0 -35.8 89.0 0.774 0.0 HOH
 2.681
 OG
 O
SER F:130 F:131 87.0 0.757 H -67.3 -34.4 87.0 0.757 0.0 HOH
 7.175
 OG
 O
3bbb 1 P22392 88.08 4e-99 X-RAY
 2008-09-23 SER A:130 A:131 88.0 0.765 H -63.1 -35.9 88.0 0.765 0.0 HOH
 3.041
 OG
 O
SER B:130 B:131 88.0 0.765 H -66.0 -33.3 88.0 0.765 0.0 HOH
 2.416
 O
 O
SER C:130 C:131 91.0 0.791 H -63.6 -36.1 91.0 0.791 0.0 HOH
 2.902
 OG
 O
SER D:130 D:131 87.0 0.757 H -61.8 -41.9 87.0 0.757 0.0 HOH
 2.880
 O
 O
SER E:130 E:131 90.0 0.783 H -65.3 -31.5 90.0 0.783 0.0 HOH
 2.761
 OG
 O
SER F:130 F:131 89.0 0.774 H -65.1 -34.4 89.0 0.774 0.0 HOH
 2.871
 OG
 O
3bbf 1 P22392 88.08 4e-99 X-RAY
 2008-09-23 SER A:130 A:131 88.0 0.765 H -63.4 -39.9 88.0 0.765 0.0 HOH
 2.438
 O
 O
SER B:130 B:131 88.0 0.765 H -59.4 -37.1 88.0 0.765 0.0 HOH
 2.720
 O
 O
SER C:130 C:131 92.0 0.8 H -62.1 -37.4 92.0 0.8 0.0 HOH
 2.975
 OG
 O
SER D:130 D:131 91.0 0.791 H -68.3 -31.8 91.0 0.791 0.0 HOH
 3.012
 OG
 O
SER E:130 E:131 89.0 0.774 H -56.7 -44.6 89.0 0.774 0.0 HOH
 2.479
 O
 O
SER F:130 F:131 94.0 0.817 H -61.4 -36.1 94.0 0.817 0.0 HOH
 7.385
 O
 O
3bbc 1 P22392 87.42 3e-98 X-RAY
 2008-09-23 SER A:130 A:131 90.0 0.783 H -57.5 -39.4 90.0 0.783 0.0 HOH
 2.817
 O
 O
SER B:130 B:131 90.0 0.783 H -63.3 -36.8 90.0 0.783 0.0 HOH
 2.434
 O
 O
SER C:130 C:131 87.0 0.757 H -68.4 -27.7 87.0 0.757 0.0 HOH
 2.682
 O
 O
SER D:130 D:131 90.0 0.783 H -65.0 -32.5 90.0 0.783 0.0 HOH
 2.383
 O
 O
SER E:130 E:131 95.0 0.826 H -62.4 -34.4 95.0 0.826 0.0 HOH
 2.456
 O
 O
SER F:130 F:131 93.0 0.809 H -63.1 -34.7 93.0 0.809 0.0 HOH
 2.955
 OG
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p15531-f1 1 P15531 100.0 3e-113 GLY A:131 A:131 59.0 0.787 H -66.6 -26.7
af-p22392-f1 1 P22392 88.16 2e-100 SER A:131 A:131 94.0 0.817 H -65.3 -30.5
af-o60361-f1 1 O60361 84.67 2e-84 SER A:116 A:116 96.0 0.835 H -62.3 -31.3