Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr17 49244291 . C A CCDS32682.1:NM_001018136.2:c.445Cgc>Agc_NP_001018146.1:p.149R>S Homo sapiens NME/NM23 nucleoside diphosphate kinase 2 (NME2), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1nsk 1 P22392 100.0 9e-113 X-RAY
 1995-10-15 ARG A:34 R:34 17.0 0.076 E -109.9 131.5 17.0 0.076 0.0
ARG B:34 L:34 17.0 0.076 E -110.1 131.2 17.0 0.076 0.0
ARG C:34 T:34 16.0 0.071 E -115.1 136.6 16.0 0.071 0.0
ARG D:34 U:34 16.0 0.071 E -117.6 134.2 16.0 0.071 0.0
ARG E:34 N:34 15.0 0.067 E -117.4 133.4 15.0 0.067 0.0
ARG F:34 O:34 17.0 0.076 E -115.9 136.5 17.0 0.076 0.0
7kpf 1 P22392 100.0 9e-113 X-RAY
 2022-02-02 ARG A:34 A:34 16.0 0.071 E -104.8 129.5 16.0 0.071 0.0 HOH
 2.685
 HA
 O
ARG B:34 B:34 11.0 0.049 E -104.5 129.7 11.0 0.049 0.0 HOH
 2.748
 HA
 O
ARG C:34 C:34 17.0 0.076 E -103.4 127.9 17.0 0.076 0.0 MG
HOH
 8.173
2.805
 HD2
HD3
 MG
O
ARG D:34 D:34 12.0 0.053 E -103.6 125.0 12.0 0.053 0.0 HOH
 2.814
 HD3
 O
ARG E:34 E:34 17.0 0.076 E -108.1 123.9 17.0 0.076 0.0 HOH
 2.934
 HA
 O
ARG F:34 F:34 16.0 0.071 E -106.0 125.7 16.0 0.071 0.0 HOH
 2.972
 HA
 O
1nue 1 P22392 100.0 7e-112 X-RAY
 1996-04-03 ARG A:33 A:34 23.0 0.102 E -99.8 128.6 23.0 0.102 0.0 HOH
 2.891
 NH2
 O
ARG B:33 B:34 14.0 0.062 E -103.6 128.2 14.0 0.062 0.0 HOH
 3.537
 CB
 O
ARG C:33 C:34 14.0 0.062 E -105.5 130.6 14.0 0.062 0.0 HOH
 3.753
 CA
 O
ARG D:33 D:34 18.0 0.08 E -102.3 132.8 18.0 0.08 0.0 HOH
 3.603
 CA
 O
ARG E:33 E:34 22.0 0.098 E -102.6 130.1 22.0 0.098 0.0 HOH
 2.899
 NH2
 O
ARG F:33 F:34 17.0 0.076 E -104.5 132.3 17.0 0.076 0.0 HOH
 3.527
 CA
 O
3bbb 1 P22392 100.0 7e-112 X-RAY
 2008-09-23 ARG A:33 A:34 16.0 0.071 E -100.9 130.0 16.0 0.071 0.0 HOH
 2.882
 NH2
 O
ARG B:33 B:34 17.0 0.076 E -101.4 129.3 17.0 0.076 0.0 HOH
 2.998
 NH2
 O
ARG C:33 C:34 8.0 0.036 E -100.2 126.4 8.0 0.036 0.0 HOH
 3.731
 CG
 O
ARG D:33 D:34 17.0 0.076 E -101.2 128.5 17.0 0.076 0.0 HOH
 2.974
 NH2
 O
ARG E:33 E:34 10.0 0.044 E -105.1 129.3 10.0 0.044 0.0 HOH
 2.812
 NH2
 O
ARG F:33 F:34 14.0 0.062 E -100.7 128.8 14.0 0.062 0.0 HOH
 2.866
 NH2
 O
3bbf 1 P22392 100.0 7e-112 X-RAY
 2008-09-23 ARG A:33 A:34 26.0 0.116 E -94.0 123.5 26.0 0.116 0.0 HOH
 2.834
 NH2
 O
ARG B:33 B:34 20.0 0.089 E -102.2 127.7 20.0 0.089 0.0 DTT
HOH
 8.469
2.972
 CA
NH2
 S1
O
ARG C:33 C:34 14.0 0.062 E -97.4 125.6 14.0 0.062 0.0 DTT
HOH
 8.174
3.694
 CA
NE
 S1
O
ARG D:33 D:34 9.0 0.04 E -106.1 125.7 9.0 0.04 0.0 DTT
HOH
 8.311
3.779
 CA
CA
 S1
O
ARG E:33 E:34 23.0 0.102 E -94.7 124.8 23.0 0.102 0.0 DTT
HOH
 8.182
3.235
 N
NH2
 S1
O
ARG F:33 F:34 16.0 0.071 E -97.2 126.5 16.0 0.071 0.0 HOH
 3.787
 NH2
 O
3bbc 1 P22392 99.34 7e-111 X-RAY
 2008-09-23 ARG A:33 A:34 19.0 0.084 E -104.7 127.6 19.0 0.084 0.0 HOH
 3.047
 NH2
 O
ARG B:33 B:34 23.0 0.102 E -102.9 124.2 23.0 0.102 0.0 HOH
 2.928
 NH2
 O
ARG C:33 C:34 19.0 0.084 E -101.1 124.6 19.0 0.084 0.0 HOH
 2.874
 NH2
 O
ARG D:33 D:34 13.0 0.058 E -105.4 127.6 13.0 0.058 0.0 HOH
 2.873
 NH2
 O
ARG E:33 E:34 16.0 0.071 E -103.1 127.6 16.0 0.071 0.0 HOH
 2.822
 NH2
 O
ARG F:33 F:34 17.0 0.076 E -104.0 128.9 17.0 0.076 0.0 HOH
 2.988
 NH2
 O
1bhn 1 P52174 90.13 1e-102 X-RAY
 1999-02-16 ARG A:34 A:34 13.0 0.058 E -105.5 120.0 13.0 0.058 0.0 HOH
 3.257
 NH2
 O
ARG B:34 B:34 14.0 0.062 E -100.7 110.0 14.0 0.062 0.0 HOH
 5.919
 CG
 O
ARG C:34 C:34 13.0 0.058 E -122.4 132.1 13.0 0.058 0.0 HOH
 4.238
 NH2
 O
ARG D:34 D:34 21.0 0.093 E -100.3 142.7 21.0 0.093 0.0 HOH
 3.313
 NH2
 O
ARG E:34 E:34 12.0 0.053 E -90.8 139.0 12.0 0.053 0.0 HOH
 2.839
 NH2
 O
ARG F:34 F:34 33.0 0.147 E -99.8 130.2 33.0 0.147 0.0 HOH
 4.447
 N
 O
1be4 1 P52175 90.07 7e-102 X-RAY
 1999-01-13 ARG A:33 A:34 25.0 0.111 E -81.9 142.4 25.0 0.111 0.0 HOH
 3.384
 NH2
 O
ARG B:33 B:34 23.0 0.102 E -130.0 134.7 23.0 0.102 0.0 HOH
 3.315
 CG
 O
ARG C:33 C:34 32.0 0.142 E -102.2 124.5 32.0 0.142 0.0 HOH
 3.558
 NH2
 O
5ui4 1 P15531 88.16 3e-100 X-RAY
 2018-01-17 ARG A:41 A:34 22.0 0.098 E -100.2 127.9 22.0 0.098 0.0 HOH
 3.637
 C
 O
ARG B:41 B:34 22.0 0.098 E -100.0 127.8 22.0 0.098 0.0 HOH
 4.487
 CB
 O
ARG C:41 C:34 22.0 0.098 E -100.5 127.8 22.0 0.098 0.0
ARG D:41 D:34 17.0 0.076 E -100.0 128.0 17.0 0.076 0.0 HOH
 4.198
 CA
 O
ARG E:41 E:34 21.0 0.093 E -99.6 127.7 21.0 0.093 0.0 HOH
 9.848
 NH2
 O
ARG F:41 F:34 21.0 0.093 E -100.4 127.9 21.0 0.093 0.0 HOH
 7.651
 NH2
 O
1jxv 1 P15531 88.16 3e-100 X-RAY
 2002-04-10 ARG A:34 A:34 28.0 0.124 E -106.7 127.4 28.0 0.124 0.0 HOH
 3.663
 CG
 O
ARG B:34 B:34 31.0 0.138 E -106.2 126.0 31.0 0.138 0.0 HOH
 3.723
 C
 O
ARG C:34 C:34 28.0 0.124 E -108.4 124.9 28.0 0.124 0.0 HOH
 3.748
 CA
 O
ARG D:34 D:34 27.0 0.12 E -109.3 124.9 27.0 0.12 0.0 HOH
 3.548
 C
 O
ARG E:34 E:34 29.0 0.129 E -106.0 123.9 29.0 0.129 0.0 HOH
 3.538
 CG
 O
ARG F:34 F:34 28.0 0.124 E -106.2 125.9 28.0 0.124 0.0 HOH
 3.590
 CG
 O
2hvd 1 P15531 88.16 3e-100 X-RAY
 2006-09-19 ARG A:34 A:34 15.0 0.067 E -98.7 129.5 15.0 0.067 0.0 HOH
 5.334
 CA
 O
ARG B:34 B:34 25.0 0.111 E -104.6 124.9 25.0 0.111 0.0 HOH
 3.679
 NH2
 O
ARG C:34 C:34 21.0 0.093 E -90.7 126.8 21.0 0.093 0.0 HOH
 2.972
 NH2
 O
4eno 1 P15531 88.16 3e-100 X-RAY
 2013-03-27 ARG A:34 A:34 117.0 0.52 E -104.0 134.4 96.0 0.427 0.093 B:P15531:0.093
 HOH
 3.502
 NH2
 O
ARG B:34 B:34 120.0 0.533 E -95.3 131.1 83.0 0.369 0.164 A:P15531:0.164
 HOH
 2.529
 NH2
 O
3l7u 1 P15531 88.16 9e-100 X-RAY
 2010-11-10 ARG A:54 A:34 35.0 0.156 E -103.0 131.6 35.0 0.156 0.0 HOH
 2.710
 NE
 O
ARG B:54 B:34 27.0 0.12 E -104.2 136.4 27.0 0.12 0.0 HOH
 2.744
 NE
 O
ARG C:54 C:34 28.0 0.124 E -100.5 130.5 28.0 0.124 0.0 PO4
HOH
 9.647
3.356
 CG
CG
 O2
O
2hve 1 P15531 87.5 2e-99 X-RAY
 2006-09-19 ARG A:34 A:34 23.0 0.102 E -102.1 133.4 23.0 0.102 0.0 HOH
 5.449
 CA
 O
ARG B:34 B:34 25.0 0.111 E -103.4 128.1 25.0 0.111 0.0 HOH
 3.720
 N
 O
ARG C:34 C:34 23.0 0.102 E -92.4 130.6 23.0 0.102 0.0 HOH
 3.640
 CA
 O
1ucn 1 P15531 86.84 8e-98 X-RAY
 2003-09-30 ARG A:34 A:34 25.0 0.111 E -105.9 132.9 25.0 0.111 0.0 HOH
 3.209
 CG
 O
ARG B:34 B:34 20.0 0.089 E -102.4 129.9 20.0 0.089 0.0 HOH
 2.788
 NH2
 O
ARG C:34 C:34 21.0 0.093 E -100.4 130.3 21.0 0.093 0.0 HOH
 3.608
 NH2
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p22392-f1 1 P22392 100.0 4e-113 ARG A:34 A:34 25.0 0.111 E -92.4 124.0
af-p15531-f1 1 P15531 88.16 1e-100 ARG A:34 A:34 23.0 0.102 E -94.8 125.8
af-o60361-f1 1 O60361 96.35 7e-96 ARG A:19 A:19 35.0 0.156 E -91.4 127.2