Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr17 5266301 . C A CCDS42243.1:NM_001083585.1:c.1658aCg>aAg_NP_001077054.1:p.553T>K Homo sapiens rabaptin, RAB GTPase binding effector protein 1 (RABEP1), transcript variant 1, mRNA.
pdb_id: 
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label_comp_id: 
auth_asym_id: 
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alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1x79 2 Q15276 100.0 6e-65 X-RAY
 2004-10-12 THR B:4 B:553 98.0 0.7 H -56.4 -42.0 41.0 0.293 0.407 A:Q9UJY5:0.057
C:Q15276:0.393
 HOH
 5.041
 OG1
 O
THR C:4 C:553 132.0 0.943 360.0 -156.2 108.0 0.771 0.172 B:Q15276:0.171
 HOH
 7.192
 O
 O
4n3y 2 Q15276 100.0 2e-50 X-RAY
 2014-07-23 THR B:3 B:553 109.0 0.779 H -55.7 -36.4 37.0 0.264 0.515 C:Q15276:0.514
 HOH
 6.960
 OG1
 O
THR C:3 C:553 82.0 0.586 H -82.4 -9.4 42.0 0.3 0.286 B:Q15276:0.286
 HOH
 4.482
 N
 O
4n3z 2 Q15276 100.0 2e-50 X-RAY
 2014-07-23 THR B:3 B:553 124.0 0.886 360.0 105.3 99.0 0.707 0.179 C:Q15276:0.179
THR C:3 C:553 136.0 0.971 360.0 -57.4 75.0 0.536 0.435 B:Q15276:0.436
4q9u 3 Q15276 100.0 2e-50 X-RAY
 2014-07-23 THR C:3 C:553 106.0 0.757 H -47.7 -50.8 106.0 0.757 0.0
THR D:3 NA:NA DO NA DO DO DO NA NA NA
THR G:3 G:553 98.0 0.7 H -54.0 -35.2 58.0 0.414 0.286 H:Q15276:0.286
THR H:3 H:553 133.0 0.95 360.0 -174.8 102.0 0.729 0.221 G:Q15276:0.221

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q15276-f1 1 Q15276 100.0 0.0 THR A:553 A:553 76.0 0.543 H -65.3 -38.2