Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr17 5268511 . G A CCDS42243.1:NM_001083585.1:c.1763aGc>aAc_NP_001077054.1:p.588S>N Homo sapiens rabaptin, RAB GTPase binding effector protein 1 (RABEP1), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
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alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1x79 2 Q15276 100.0 6e-65 X-RAY
 2004-10-12 SER B:39 B:588 52.0 0.452 H -60.3 -35.2 52.0 0.452 0.0 DTT
HOH
 2.938
9.611
 OG
N
 C4
O
SER C:39 C:588 47.0 0.409 H -72.5 -39.6 47.0 0.409 0.0 DTT
HOH
 2.962
6.212
 OG
N
 C1
O
4n3y 2 Q15276 100.0 2e-50 X-RAY
 2014-07-23 SER B:38 B:588 51.0 0.443 H -65.1 -39.6 18.0 0.157 0.286 C:Q15276:0.287
 HOH
 3.175
 OG
 O
SER C:38 C:588 58.0 0.504 H -64.3 -42.0 53.0 0.461 0.043 B:Q15276:0.043
 HOH
 2.883
 OG
 O
4n3z 2 Q15276 100.0 2e-50 X-RAY
 2014-07-23 SER B:38 B:588 45.0 0.391 37.3 64.7 45.0 0.391 0.0 PO4
 8.552
 OG
 O4
SER C:38 C:588 67.0 0.583 H -75.7 -15.9 37.0 0.322 0.261 B:Q15276:0.261
4q9u 3 Q15276 100.0 2e-50 X-RAY
 2014-07-23 SER C:38 C:588 46.0 0.4 H -58.8 -58.1 8.0 0.07 0.33 A:Q9UJ41:0.33
D:Q15276:0.043
SER D:38 D:588 54.0 0.47 H -57.6 -38.5 4.0 0.035 0.435 H:Q15276:0.183
G:Q15276:0.322
C:Q15276:0.183
A:Q9UJ41:0.035
SER G:38 G:588 55.0 0.478 H -59.9 -45.9 5.0 0.043 0.435 H:Q15276:0.026
E:Q9UJ41:0.417
SER H:38 H:588 52.0 0.452 H -60.8 -43.5 12.0 0.104 0.348 G:Q15276:0.035
C:Q15276:0.278
D:Q15276:0.07
E:Q9UJ41:0.061

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q15276-f1 1 Q15276 100.0 0.0 SER A:588 A:588 61.0 0.53 H -61.9 -36.7