Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr17 79618705 . C A CCDS11783.1:NM_002602.3:c.157Gac>Tac_NP_002593.1:p.53D>Y Homo sapiens phosphodiesterase 6G (PDE6G), transcript variant 1, mRNA.
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alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
6mzb 3 P04972 97.7 2e-59 EM
 2019-03-06 ASP C:53 NA:NA DO NA DO DO DO NA NA NA
ASP D:53 NA:NA DO NA DO DO DO NA NA NA
7jsn 4 P04972 97.7 2e-59 EM
 2020-10-21 ASP E:53 C:53 102.0 0.68 77.1 15.1 96.0 0.64 0.04 B:P23439:0.04
ASP F:53 D:53 136.0 0.907 -138.5 15.2 110.0 0.733 0.174 A:P11541:0.173
2ju4 1 P04972 88.51 4e-54 NMR
 2007-10-16 ASP A:53 A:53 93.0 0.62 S -155.6 -56.7 93.0 0.62 0.0 RCY
RCY
RCY
RCY
 8.089
3.862
5.948
8.067
 O
H
N
H
 C1C
C1Z
C1L
C1L
1fqj 3 P04972 100.0 3e-26 X-RAY
 2001-02-28 ASP C:8 C:53 113.0 0.753 -109.9 10.8 113.0 0.753 0.0 HOH
 6.644
 OD2
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p18545-f1 1 P18545 100.0 2e-61 ASP A:53 A:53 153.0 1.0 14.9 46.9
af-q13956-f1 1 Q13956 94.2 4e-45 ASP A:49 A:49 108.0 0.72 T -83.2 -10.3