Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr17 79991391 . G A CCDS11798.1:NM_005052.2:c.364Gac>Aac_NP_005043.1:p.122D>N Homo sapiens ras-related C3 botulinum toxin substrate 3 (rho family, small GTP binding protein Rac3) (RAC3), transcript variant 1, mRNA.
pdb_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id
alphafold_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
6tm1 2 P60763 100.0 1e-143 X-RAY
2020-01-22 ASP B:122 A:122 22.0 NA -94.6 123.3 22.0 NA NA
2c2h 1 P60763 99.48 3e-142 X-RAY
2005-10-13 ASP A:122 A:122 66.0 0.44 -76.6 123.5 66.0 0.44 0.0 GDP
GDP
HOH
7.912
7.738
2.888
CB
N
OD2
N2
O1B
O
ASP B:122 B:122 52.0 0.347 -85.2 116.3 NA NA NA
1i4d 2 P63000 92.71 2e-134 X-RAY
2001-05-16 ASP C:122 D:122 54.0 0.36 -90.6 137.5 54.0 0.36 0.0 GDP
HOH
7.526
5.316
CB
OD2
N2
O
1i4l 2 P63000 92.71 2e-134 X-RAY
2001-05-16 ASP C:122 D:122 30.0 0.2 -108.8 152.8 30.0 0.2 0.0 GDP
HOH
7.079
5.131
OD2
OD1
N2
O
6tgc 3 P63000 92.71 2e-134 EM
2020-07-29 ASP C:122 C:122 97.0 0.647 -58.9 142.3 97.0 0.647 0.0
ASP F:122 F:122 97.0 0.647 -58.8 142.3 97.0 0.647 0.0
5fi0 2 P63000 92.71 3e-134 X-RAY
2016-04-20 ASP B:125 B:122 49.0 0.327 -71.6 117.8 49.0 0.327 0.0
ASP D:125 D:122 48.0 0.32 -73.6 120.7 NA NA NA
ASP F:125 F:122 55.0 0.367 -74.5 122.5 NA NA NA
ASP H:125 H:122 66.0 0.44 -73.4 121.4 NA NA NA
1i4t 2 P63000 92.19 3e-133 X-RAY
2001-05-16 ASP C:122 D:122 32.0 0.213 -116.9 146.8 32.0 0.213 0.0 GNP
HOH
7.117
7.118
OD2
O
N2
O
2vrw 1 P63000 95.65 7e-133 X-RAY
2008-06-17 ASP A:122 A:122 60.0 0.4 -70.1 127.9 60.0 0.4 0.0 HOH
7.108
OD2
O
1e96 1 P15154 92.15 4e-132 X-RAY
2000-11-17 ASP A:122 A:122 64.0 0.427 -79.6 123.7 64.0 0.427 0.0 GTP
HOH
7.357
2.428
OD2
OD1
N2
O
1hh4 1 P15154 92.15 4e-132 X-RAY
2001-08-28 ASP A:122 A:122 67.0 0.447 -41.0 130.7 67.0 0.447 0.0 GDP
HOH
7.675
9.768
CB
N
N2
O
ASP B:122 B:122 51.0 0.34 -43.2 123.1 NA NA NA
1g4u 2 P63000 95.11 8e-132 X-RAY
2001-01-24 ASP B:122 R:122 44.0 0.293 -96.7 114.9 44.0 0.293 0.0 GDP
HOH
8.087
3.102
CB
OD1
N2
O
2h7v 1 P63000 95.11 1e-131 X-RAY
2006-09-19 ASP A:126 A:122 54.0 0.36 -94.5 115.1 54.0 0.36 0.0 GDP
6.776
OD1
N2
ASP B:126 B:122 51.0 0.34 -82.2 118.1 NA NA NA
2p2l 1 P63000 95.11 1e-131 X-RAY
2007-05-01 ASP A:126 A:122 48.0 0.32 -79.9 118.3 48.0 0.32 0.0 GDP
HOH
7.401
4.520
CB
OD2
N2
O
ASP B:126 B:122 63.0 0.42 -67.8 113.0 63.0 0.42 0.0 GDP
HOH
7.152
3.017
OD2
OD1
N2
O
ASP C:126 C:122 59.0 0.393 142.4 145.7 59.0 0.393 0.0 GDP
HOH
8.425
1.973
O
OD2
N2
O
2g0n 1 P60763 100.0 1e-131 X-RAY
2006-05-30 ASP A:123 A:122 62.0 0.413 -77.6 123.0 62.0 0.413 0.0 GDP
HOH
8.048
2.609
CB
OD2
N2
O
ASP B:123 B:122 63.0 0.42 -68.8 120.6 NA NA NA
2ov2 1 P60763 100.0 1e-131 X-RAY
2007-03-13 ASP A:123 A:122 67.0 0.447 -68.1 107.4 67.0 0.447 0.0 GCP
HOH
7.853
2.665
CB
OD2
N2
O
ASP B:123 F:122 60.0 0.4 -73.5 116.2 NA NA NA
ASP C:123 B:122 62.0 0.413 -70.1 120.2 NA NA NA
ASP D:123 C:122 59.0 0.393 -77.3 118.3 NA NA NA
ASP E:123 G:122 59.0 0.393 -72.4 117.3 NA NA NA
ASP F:123 D:122 58.0 0.387 -85.2 114.8 NA NA NA
ASP G:123 E:122 60.0 0.4 -85.0 113.6 NA NA NA
ASP H:123 H:122 74.0 0.493 -106.4 360.0 NA NA NA
2qme 1 P60763 100.0 1e-131 X-RAY
2007-08-28 ASP A:123 A:122 61.0 0.407 -77.8 119.2 61.0 0.407 0.0 GCP
HOH
7.405
2.586
CB
OD2
N2
O
2ic5 1 P60763 100.0 1e-131 X-RAY
2006-10-10 ASP A:123 A:122 59.0 0.393 -78.3 125.5 59.0 0.393 0.0 GNP
HOH
8.016
2.537
CB
OD2
N2
O
ASP B:123 B:122 61.0 0.407 -71.8 121.0 NA NA NA
1mh1 1 P63000 95.08 9e-131 X-RAY
1998-01-21 ASP A:124 A:122 64.0 0.427 -89.6 106.6 64.0 0.427 0.0 GNP
HOH
7.532
2.662
CB
OD1
N2
O
1ds6 1 P15153 88.54 2e-129 X-RAY
2000-07-12 ASP A:122 A:122 65.0 0.433 -68.2 118.3 65.0 0.433 0.0 GDP
HOH
7.601
2.825
CB
OD1
N2
O
2yin 2 P63000 95.48 2e-127 X-RAY
2011-05-25 ASP C:141 C:122 64.0 0.427 -73.3 124.9 NA NA NA
ASP D:141 D:122 67.0 0.447 -74.3 123.3 67.0 0.447 0.0 HOH
6.549
N
O
2fju 1 P63000 95.48 2e-127 X-RAY
2006-11-21 ASP A:122 A:122 52.0 0.347 -72.7 126.8 52.0 0.347 0.0 GSP
HOH
7.370
5.222
OD2
OD1
N2
O
5qqd 1 P63000 95.48 2e-127 X-RAY
2019-12-18 ASP A:123 A:122 58.0 0.387 -84.1 119.0 58.0 0.387 0.0 EDO
JGA
HOH
9.064
7.787
2.311
N
OD2
OD1
O1
C01
O
5qqe 1 P63000 95.48 2e-127 X-RAY
2019-12-18 ASP A:123 A:122 63.0 0.42 -104.9 123.2 63.0 0.42 0.0 EDO
N5S
HOH
8.796
5.504
2.504
N
OD2
OD1
O2
F
O
5qqf 1 P63000 95.48 2e-127 X-RAY
2019-12-18 ASP A:123 A:122 60.0 0.4 -105.0 121.2 60.0 0.4 0.0 EDO
N5V
HOH
8.458
8.681
2.689
N
CG
OD1
O1
C1
O
5qqg 1 P63000 95.48 2e-127 X-RAY
2019-12-18 ASP A:123 A:122 61.0 0.407 -89.7 122.3 61.0 0.407 0.0 EDO
N64
HOH
8.846
7.645
2.463
N
OD2
OD2
O1
C5
O
5qqh 1 P63000 95.48 2e-127 X-RAY
2019-12-18 ASP A:123 A:122 62.0 0.413 -100.6 119.6 62.0 0.413 0.0 EDO
N67
HOH
8.912
7.001
2.648
N
OD2
OD1
O1
S1
O
5qqi 1 P63000 95.48 2e-127 X-RAY
2019-12-18 ASP A:123 A:122 62.0 0.413 -93.0 122.3 62.0 0.413 0.0 EDO
N6D
HOH
8.779
3.652
2.578
N
OD1
OD1
O1
C
O
5qqj 1 P63000 95.48 2e-127 X-RAY
2019-12-18 ASP A:123 A:122 61.0 0.407 -97.5 119.0 61.0 0.407 0.0 EDO
N6J
HOH
8.532
5.415
2.496
N
OD2
OD1
O1
C12
O
5qqk 1 P63000 95.48 2e-127 X-RAY
2019-12-18 ASP A:123 A:122 59.0 0.393 -98.6 122.6 59.0 0.393 0.0 EDO
N6V
HOH
8.311
5.101
2.499
N
OD2
OD1
O1
C
O
5qql 1 P63000 95.48 2e-127 X-RAY
2019-12-18 ASP A:123 A:122 60.0 0.4 -111.9 115.7 60.0 0.4 0.0 EDO
N71
HOH
8.446
7.046
2.434
N
OD2
OD1
O1
O1
O
5qqm 1 P63000 95.48 2e-127 X-RAY
2019-12-18 ASP A:123 A:122 59.0 0.393 -102.0 122.0 59.0 0.393 0.0 EDO
N74
HOH
8.647
7.125
2.412
N
OD1
OD1
O2
C14
O
5qqn 1 P63000 95.48 2e-127 X-RAY
2019-12-18 ASP A:123 A:122 62.0 0.413 -112.4 120.5 62.0 0.413 0.0 EDO
N5D
HOH
8.606
5.486
2.430
N
OD2
OD1
O2
C9
O
5qu9 1 P63000 95.48 2e-127 X-RAY
2020-01-29 ASP A:123 A:122 61.0 0.407 -75.7 123.6 61.0 0.407 0.0 EDO
HOH
7.835
2.831
N
OD1
O1
O
1foe 2 P63000 95.48 3e-127 X-RAY
2001-01-17 ASP B:122 B:122 53.0 0.353 -103.2 123.4 53.0 0.353 0.0 HOH
9.143
CB
O
ASP D:122 D:122 52.0 0.347 -103.3 123.7 NA NA NA
ASP F:122 F:122 53.0 0.353 -103.5 123.4 NA NA NA
ASP H:122 H:122 55.0 0.367 -101.9 125.3 NA NA NA
2nz8 1 P63000 95.48 3e-127 X-RAY
2007-04-10 ASP A:122 A:122 62.0 0.413 -74.5 118.5 62.0 0.413 0.0 HOH
7.696
O
O
3bji 2 P63000 95.48 3e-127 X-RAY
2008-07-15 ASP C:122 C:122 57.0 0.38 -56.6 164.4 NA NA NA
ASP D:122 D:122 121.0 0.807 -167.7 148.5 121.0 0.807 0.0
5o33 1 P63000 95.48 3e-127 X-RAY
2017-05-31 ASP A:122 A:122 62.0 0.413 -84.4 123.4 62.0 0.413 0.0 EDO
GDP
HOH
7.924
7.739
2.853
N
CB
OD1
O1
N2
O
3su8 1 P63000 95.48 3e-127 X-RAY
2011-09-28 ASP A:122 A:122 67.0 0.447 -70.9 133.0 67.0 0.447 0.0 GNP
8.003
OD2
N2
3sua 1 P63000 95.48 3e-127 X-RAY
2011-09-07 ASP A:122 A:122 56.0 0.373 -79.2 138.1 56.0 0.373 0.0 GNP
8.352
CB
N2
ASP B:122 B:122 58.0 0.387 -79.1 138.5 NA NA NA
ASP C:122 C:122 57.0 0.38 -78.5 138.1 NA NA NA
6x1g 2 P63000 95.48 3e-127 X-RAY
2020-11-25 ASP C:122 B:122 67.0 0.447 -81.0 121.3 67.0 0.447 0.0 HOH
5.042
OD1
O
ASP D:122 D:122 66.0 0.44 -82.6 120.9 NA NA NA
3b13 2 P63000 94.92 7e-127 X-RAY
2012-03-14 ASP B:129 B:122 61.0 0.407 -77.3 117.4 61.0 0.407 0.0
ASP D:129 D:122 58.0 0.387 -70.8 124.2 58.0 0.387 0.0
1ryf 1 P63000 86.57 9e-127 X-RAY
2004-01-27 ASP A:143 A:141 54.0 0.36 -76.6 126.2 54.0 0.36 0.0 GDP
HOH
7.525
2.601
OD2
OD1
N2
O
ASP B:143 B:141 52.0 0.347 -85.0 119.3 NA NA NA
1ryh 1 P63000 86.57 9e-127 X-RAY
2004-01-27 ASP A:143 A:141 55.0 0.367 -78.5 130.0 55.0 0.367 0.0 GNP
HOH
7.622
2.591
OD2
OD1
N2
O
ASP B:143 B:141 60.0 0.4 -79.7 123.3 NA NA NA
7dpa 2 P63000 94.92 1e-126 EM
2021-08-04 ASP B:129 B:122 64.0 0.427 -76.3 125.8 64.0 0.427 0.0
ASP E:129 E:122 62.0 0.413 -76.3 125.8 62.0 0.413 0.0
5n6o 1 P63000 95.45 3e-126 X-RAY
2017-12-27 ASP A:121 A:122 58.0 0.387 -76.2 110.7 58.0 0.387 0.0 GDP
HOH
6.694
6.537
OD2
N
HN21
O
ASP B:121 B:122 66.0 0.44 -63.7 112.8 NA NA NA
6bc1 1 P63000 95.45 5e-126 X-RAY
2017-12-13 ASP A:122 A:122 68.0 0.453 -57.0 107.9 68.0 0.453 0.0 GSP
HOH
6.242
5.306
HB2
O
HN22
O
ASP C:122 B:122 71.0 0.473 -58.5 113.0 NA NA NA
4yon 2 P63000 94.92 5e-126 X-RAY
2015-07-01 ASP B:124 B:122 58.0 0.387 -79.4 124.0 58.0 0.387 0.0 HOH
2.743
OD2
O
3th5 1 P63000 95.45 8e-126 X-RAY
2012-07-18 ASP A:149 A:122 45.0 0.3 -82.4 134.8 45.0 0.3 0.0 GNP
HOH
7.336
9.044
OD2
N
N2
O
ASP B:149 B:122 45.0 0.3 -137.5 142.0 NA NA NA
3ryt 2 P63000 94.92 1e-125 X-RAY
2012-01-18 ASP C:125 C:122 62.0 0.413 -100.2 154.2 62.0 0.413 0.0 GNP
7.965
OD2
N2
1he1 2 P15154 95.43 1e-125 X-RAY
2001-01-02 ASP C:122 C:122 61.0 0.407 -85.9 114.7 61.0 0.407 0.0 GDP
HOH
7.182
2.643
CB
OD1
N2
O
ASP D:122 D:122 65.0 0.433 -68.9 121.1 NA NA NA
6agp 1 P63000 93.37 1e-125 NMR
2019-03-20 ASP A:122 A:122 64.0 0.427 -69.7 118.0 64.0 0.427 0.0 GDP
6.256
HB2
HN21
3sbd 1 P63000 94.89 2e-125 X-RAY
2012-07-18 ASP A:132 A:122 54.0 0.36 -71.0 113.2 54.0 0.36 0.0 GNP
HOH
8.035
3.934
OD2
N
N2
O
ASP B:132 B:122 56.0 0.373 -91.3 120.4 NA NA NA
3sbe 1 P63000 94.89 2e-125 X-RAY
2012-07-18 ASP A:132 A:122 57.0 0.38 -71.3 125.1 57.0 0.38 0.0 GNP
HOH
6.895
6.256
OD2
N
N2
O
7ajk 1 P63000 94.89 3e-125 X-RAY
2020-11-18 ASP A:125 BBB:122 52.0 0.347 -144.1 116.2 52.0 0.347 0.0 GNP
HOH
7.248
9.285
OD2
N
N2
O
4gzm 1 P63000 94.89 6e-125 X-RAY
2012-12-12 ASP A:149 A:122 68.0 0.453 -66.1 121.9 68.0 0.453 0.0 GSP
7.525
OD2
N2
ASP B:149 B:122 66.0 0.44 -66.2 123.0 NA NA NA
4gzl 1 P63000 94.89 1e-124 X-RAY
2012-12-12 ASP A:149 A:122 61.0 0.407 -83.5 127.5 61.0 0.407 0.0 GNP
IPA
HOH
7.684
7.554
3.827
OD2
N
N
N2
C1
O
ASP B:149 B:122 62.0 0.413 -73.3 132.5 NA NA NA
2w2t 1 P15153 93.26 4e-124 X-RAY
2009-05-05 ASP A:128 A:122 66.0 0.44 -50.0 137.1 66.0 0.44 0.0 GDP
HOH
7.611
2.598
CB
OD1
N2
O
2w2x 1 P15153 93.26 4e-124 X-RAY
2009-05-05 ASP A:128 A:122 58.0 0.387 -93.0 124.6 58.0 0.387 0.0 GSP
7.764
CG
N2
ASP B:128 B:122 50.0 0.333 -92.5 122.9 NA NA NA
2wkq 1 O49003,P63000 92.74 5e-124 X-RAY
2009-08-18 ASP A:274 A:665 59.0 0.393 -78.0 122.3 59.0 0.393 0.0 GTP
CL
HOH
7.248
9.060
2.867
CG
N
OD2
N2
CL
O
2wkr 1 O49003,P63000 92.74 5e-124 X-RAY
2009-08-18 ASP A:274 A:665 61.0 0.407 -69.3 125.6 61.0 0.407 0.0 GTP
CL
HOH
7.263
9.018
2.919
CG
N
OD1
N2
CL
O
2wkp 1 O49003,P63000 92.74 8e-124 X-RAY
2009-08-18 ASP A:274 A:665 59.0 0.393 -74.4 122.2 59.0 0.393 0.0 GTP
HOH
7.274
2.397
CG
OD2
N2
O
2w2v 1 P15153 93.22 4e-123 X-RAY
2009-05-05 ASP A:129 A:122 66.0 0.44 -64.5 129.7 66.0 0.44 0.0 GTP
HOH
7.345
3.076
OD2
OD2
N2
O
ASP B:129 B:122 62.0 0.413 -146.4 119.0 NA NA NA
ASP C:129 C:122 68.0 0.453 -40.1 122.0 NA NA NA
ASP D:129 D:122 53.0 0.353 -64.7 118.8 NA NA NA
5hzh 1 P63000,O49003 86.81 4e-90 X-RAY
2016-12-21 ASP A:274 A:271 56.0 0.373 -105.3 132.2 56.0 0.373 0.0 GTP
7.476
CB
N2

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p60763-f1 1 P60763 100.0 5e-144 ASP A:122 A:122 59.0 0.393 -74.7 125.2
af-p63000-f1 1 P63000 92.71 8e-135 ASP A:122 A:122 57.0 0.38 -73.9 126.8
af-p15153-f1 1 P15153 88.54 7e-130 ASP A:122 A:122 58.0 0.387 -74.2 126.3