Variant
Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr17 | 8065042 | . | G | A | CCDS32561.1:NM_014232.2:c.166Cga>Tga_NP_055047.2:p.56R>* | Homo sapiens vesicle associated membrane protein 2 (VAMP2), transcript variant 1, mRNA. |
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PDB
Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
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PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
1sfc | 1 | P63045 | 98.96 | 4e-66 |
X-RAY |
1998-10-28 | ARG | A:56 | A:56 | 152.0 | 0.676 | H | -74.4 | -41.0 | 0.0 | 0.0 | 0.676 |
B:P32851:0.231 D:P60881:0.373 C:P60881:0.387 |
SR HOH |
9.114 7.958 |
NH1 NH1 |
SR O |
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ARG | E:56 | E:56 | 163.0 | 0.724 | H | -61.8 | -30.3 | NA | NA | NA | |||||||||||||
ARG | I:56 | I:56 | 153.0 | 0.68 | H | -55.2 | -36.7 | NA | NA | NA | |||||||||||||
6ip1 | 1 | P63045 | 98.94 | 3e-64 |
EM |
2019-04-24 | ARG | A:59 | A:56 | 145.0 | 0.644 | H | -72.6 | -15.0 | 0.0 | 0.0 | 0.644 |
B:P32851:0.24 D:P60881:0.347 C:P60881:0.32 |
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6mdm | 4 | P63045 | 98.88 | 2e-60 |
EM |
2018-09-19 | ARG | I:84 | J:56 | 102.0 | 0.453 | H | -69.5 | -59.4 | 10.0 | 0.044 | 0.409 |
H:P32851:0.231 G:P60881:0.204 |
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6mdn | 4 | P63045 | 98.88 | 2e-60 |
EM |
2018-09-19 | ARG | I:84 | J:56 | 104.0 | 0.462 | H | -61.3 | -55.9 | 3.0 | 0.013 | 0.449 |
H:P32851:0.173 G:P60881:0.307 |
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3hd7 | 1 | P63045 | 100.0 | 1e-59 |
X-RAY |
2009-07-14 | ARG | A:31 | A:56 | 164.0 | 0.729 | H | -63.9 | -20.7 | 0.0 | 0.0 | 0.729 |
B:P32851:0.311 D:P60881:0.36 C:P60881:0.338 |
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ARG | E:31 | E:56 | 162.0 | 0.72 | H | -56.6 | -30.3 | NA | NA | NA | |||||||||||||
3ipd | 1 | P63045 | 100.0 | 1e-59 |
X-RAY |
2009-09-01 | ARG | A:31 | A:56 | 155.0 | 0.689 | H | -61.0 | -46.7 | 7.0 | 0.031 | 0.658 |
D:P60881:0.347 C:P60881:0.307 B:P32851:0.196 |
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ARG | E:31 | E:56 | 155.0 | 0.689 | H | -61.3 | -46.4 | NA | NA | NA | |||||||||||||
2n1t | 1 | P63045 | 100.0 | 2e-45 |
NMR |
2015-06-03 | ARG | A:32 | A:56 | 170.0 | 0.756 | H | -61.6 | -41.8 | 2.0 | 0.009 | 0.747 |
D:P60880:0.356 C:P60880:0.311 B:P32851:0.293 |
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1kil | 1 | P63045 | 100.0 | 3e-42 |
X-RAY |
2002-03-13 | ARG | A:30 | A:56 | 170.0 | 0.756 | H | -55.7 | -41.3 | 0.0 | 0.0 | 0.756 |
D:P60880:0.373 B:P32851:0.311 C:P60880:0.391 |
MG HOH |
9.348 6.620 |
NH2 N |
MG O |
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1n7s | 1 | P63045 | 100.0 | 4e-39 |
X-RAY |
2002-12-27 | ARG | A:30 | A:56 | 157.0 | 0.698 | H | -61.5 | -37.9 | 0.0 | 0.0 | 0.698 |
D:P60881:0.364 B:P32851:0.244 C:P60881:0.4 |
HOH |
2.960 |
CD |
O |
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3j96 | 3 | P63045 | 100.0 | 4e-39 |
EM |
2015-01-28 | ARG | K:30 | K:56 | 158.0 | 0.702 | H | -73.1 | -5.5 | 14.0 | 0.062 | 0.64 |
L:P32851:0.413 M:None:0.356 |
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3j97 | 3 | P63045 | 100.0 | 4e-39 |
EM |
2015-01-28 | ARG | K:30 | K:56 | 149.0 | 0.662 | H | -70.8 | -45.3 | 2.0 | 0.009 | 0.653 |
L:P32851:0.058 M:None:0.622 |
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3j98 | 3 | P63045 | 100.0 | 4e-39 |
EM |
2015-01-28 | ARG | K:30 | K:56 | 138.0 | 0.613 | H | -74.6 | -34.4 | 5.0 | 0.022 | 0.591 |
M:None:0.569 L:P32851:0.044 |
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3j99 | 3 | P63045 | 100.0 | 4e-39 |
EM |
2015-01-28 | ARG | K:30 | K:56 | 139.0 | 0.618 | H | -74.6 | -34.4 | 5.0 | 0.022 | 0.596 |
M:None:0.573 L:P32851:0.049 |
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5ccg | 1 | P63045 | 100.0 | 4e-39 |
X-RAY |
2015-08-12 | ARG | A:30 | A:56 | 158.0 | 0.702 | H | -58.9 | -37.3 | 0.0 | 0.0 | 0.702 |
D:P60881:0.387 B:P32851:0.222 C:P60881:0.387 |
CA CA CA |
6.433 7.945 9.050 |
N N NH2 |
CA CA CA |
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ARG | G:30 | G:56 | 159.0 | 0.707 | H | -59.8 | -39.2 | NA | NA | NA | |||||||||||||
5cch | 1 | P63045 | 100.0 | 4e-39 |
X-RAY |
2015-08-12 | ARG | A:30 | A:56 | 154.0 | 0.684 | H | -56.0 | -38.4 | 0.0 | 0.0 | 0.684 |
B:P32851:0.253 D:P60881:0.364 C:P60881:0.36 |
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5cci | 1 | P63045 | 100.0 | 4e-39 |
X-RAY |
2015-08-12 | ARG | A:30 | A:56 | 161.0 | 0.716 | H | -58.7 | -36.3 | 0.0 | 0.0 | 0.716 |
B:P32851:0.28 D:P60881:0.347 C:P60881:0.373 |
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5kj7 | 1 | P63025 | 100.0 | 4e-39 |
X-RAY |
2016-10-19 | ARG | A:30 | A:56 | 158.0 | 0.702 | H | -61.0 | -36.4 | 0.0 | 0.0 | 0.702 |
B:P32851:0.236 D:P60881:0.373 C:P60881:0.378 |
CA CA CA |
6.293 8.020 8.974 |
N N NH2 |
CA CA CA |
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ARG | G:30 | G:56 | 158.0 | 0.702 | H | -62.0 | -37.5 | NA | NA | NA | |||||||||||||
5kj8 | 1 | P63025 | 100.0 | 4e-39 |
X-RAY |
2016-10-19 | ARG | A:30 | A:56 | 159.0 | 0.707 | H | -55.0 | -37.7 | 0.0 | 0.0 | 0.707 |
B:P32851:0.227 C:P60881:0.387 D:P60881:0.382 |
CA |
8.724 |
NH2 |
CA |
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ARG | G:30 | G:56 | 160.0 | 0.711 | H | -56.7 | -38.3 | NA | NA | NA | |||||||||||||
6mti | 3 | P63045 | 100.0 | 4e-39 |
EM |
2019-04-24 | ARG | G:30 | A:56 | 163.0 | 0.724 | H | -58.7 | -36.3 | 1.0 | 0.004 | 0.72 |
H:P32851:0.284 I:P60881:0.373 J:P60881:0.351 |
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ARG | K:30 | E:56 | 161.0 | 0.716 | H | -58.7 | -36.4 | 0.0 | 0.0 | 0.716 |
N:P60881:0.356 M:P60881:0.378 L:P32851:0.271 |
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ARG | O:30 | I:56 | 163.0 | 0.724 | H | -58.7 | -36.3 | 1.0 | 0.004 | 0.72 |
Q:P60881:0.378 R:P60881:0.351 P:P32851:0.28 |
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ARG | S:30 | M:56 | 162.0 | 0.72 | H | -58.7 | -36.4 | 0.0 | 0.0 | 0.72 |
V:P60881:0.347 T:P32851:0.284 U:P60881:0.378 |
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ARG | W:30 | Q:56 | 161.0 | 0.716 | H | -58.6 | -36.4 | 1.0 | 0.004 | 0.712 |
Y:P60881:0.373 X:P32851:0.28 Z:P60881:0.347 |
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ARG | AA:30 | U:56 | 160.0 | 0.711 | H | -58.7 | -36.4 | 1.0 | 0.004 | 0.707 |
BA:P32851:0.276 CA:P60881:0.373 DA:P60881:0.342 |
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6wvw | 1 | P63045 | 100.0 | 4e-39 |
X-RAY |
2021-03-17 | ARG | A:30 | A:56 | 158.0 | 0.702 | H | -59.0 | -41.2 | 0.0 | 0.0 | 0.702 |
D:P60881:0.351 B:P32851:0.258 C:P60881:0.382 |
CA HOH |
7.970 6.288 |
HH21 HB2 |
CA O |
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ARG | E:30 | E:56 | 162.0 | 0.72 | H | -59.5 | -41.2 | NA | NA | NA | |||||||||||||
1l4a | 1 | P47194 | 86.57 | 2e-37 |
X-RAY |
2002-07-31 | ARG | A:41 | A:65 | 168.0 | 0.747 | H | -75.9 | -27.6 | 6.0 | 0.027 | 0.72 |
B:O46345:0.258 C:Q8T3S4:0.396 D:Q8T3S4:0.391 |
HOH |
7.423 |
N |
O |
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5w5c | 1 | P63045 | 100.0 | 1e-20 |
X-RAY |
2017-08-23 | ARG | A:30 | A:56 | 161.0 | 0.716 | H | -54.9 | -41.5 | 0.0 | 0.0 | 0.716 |
D:P60881:0.382 B:P32851:0.258 C:P60881:0.396 |
MG HOH |
9.199 3.015 |
NH2 CD |
MG O |
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5w5d | 1 | P63045 | 100.0 | 1e-20 |
X-RAY |
2017-08-23 | ARG | A:30 | A:56 | 159.0 | 0.707 | H | -59.3 | -42.0 | 0.0 | 0.0 | 0.707 |
B:P32851:0.249 C:P60881:0.4 D:P60881:0.378 |
MG HOH |
9.778 3.091 |
NH2 CD |
MG O |
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3fie | 2 | P63027 | 100.0 | 4e-19 |
X-RAY |
2009-06-23 | ARG | C:35 | C:56 | 186.0 | 0.827 | -153.7 | 173.2 | 69.0 | 0.307 | 0.52 |
A:Q57236:0.52 |
ZN HOH |
7.511 2.926 |
O N |
ZN O |
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ARG | D:35 | D:56 | 185.0 | 0.822 | -158.2 | 174.8 | NA | NA | NA | ||||||||||||||
3rk2 | 1 | P63027 | 97.14 | 2e-16 |
X-RAY |
2011-07-27 | ARG | A:33 | A:56 | 161.0 | 0.716 | H | -67.9 | -27.8 | 0.0 | 0.0 | 0.716 |
D:P60880:0.36 B:P32851:0.267 C:P60880:0.404 |
HOH |
6.511 |
O |
O |
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ARG | E:33 | E:56 | 160.0 | 0.711 | H | -68.1 | -34.8 | NA | NA | NA | |||||||||||||
3rk3 | 1 | P63027 | 97.14 | 2e-16 |
X-RAY |
2011-07-27 | ARG | A:33 | A:56 | 171.0 | 0.76 | H | -55.8 | -62.6 | 2.0 | 0.009 | 0.751 |
B:P32851:0.293 D:P60880:0.342 C:P60880:0.427 |
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3rl0 | 1 | P63027 | 97.14 | 2e-16 |
X-RAY |
2011-07-27 | ARG | A:33 | A:56 | 164.0 | 0.729 | H | -64.3 | -34.7 | 1.0 | 0.004 | 0.725 |
B:P32851:0.262 D:P60880:0.387 C:P60880:0.307 |
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ARG | E:33 | E:56 | 163.0 | 0.724 | H | -63.3 | -35.1 | NA | NA | NA | |||||||||||||
ARG | I:33 | I:56 | 163.0 | 0.724 | H | -65.0 | -35.2 | NA | NA | NA | |||||||||||||
ARG | M:33 | M:56 | 162.0 | 0.72 | H | -64.4 | -34.9 | NA | NA | NA | |||||||||||||
ARG | Q:33 | Q:56 | 163.0 | 0.724 | H | -63.3 | -35.8 | NA | NA | NA | |||||||||||||
ARG | U:33 | U:56 | 162.0 | 0.72 | H | -64.1 | -34.5 | NA | NA | NA | |||||||||||||
ARG | Y:33 | Y:56 | 164.0 | 0.729 | H | -65.0 | -35.1 | NA | NA | NA | |||||||||||||
ARG | CA:33 | c:56 | 165.0 | 0.733 | H | -65.2 | -35.0 | NA | NA | NA | |||||||||||||
3fii | 2 | P63027 | 100.0 | 5e-14 |
X-RAY |
2009-06-23 | ARG | B:30 | B:56 | 190.0 | 0.844 | -156.0 | -177.3 | 74.0 | 0.329 | 0.515 |
A:Q57236:0.516 |
ZN HOH |
7.284 4.662 |
C NH2 |
ZN O |
AlphaFold DB
Entity | Residue | Monomer | View | ||||||||||
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ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
af-p63027-f1 | 1 | P63027 | 100.0 | 9e-83 | ARG | A:56 | A:56 | 174.0 | 0.773 | H | -69.4 | -37.8 | |
af-q15836-f1 | 1 | Q15836 | 86.42 | 5e-44 | ARG | A:39 | A:39 | 162.0 | 0.72 | H | -64.3 | -42.2 |