Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr18 45372124 . A C CCDS11934.1:NM_001003652.3:c.1045Tgc>Ggc_NP_001003652.1:p.349C>G Homo sapiens SMAD family member 2 (SMAD2), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
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label_comp_id: 
auth_asym_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1khx 1 Q15796 100.0 1e-169 X-RAY
 2002-02-06 CYS A:109 A:349 0.0 0.0 E -86.7 97.9 0.0 0.0 0.0 HOH
 3.504
 O
 O
6zvq 1 Q15796 100.0 1e-169 X-RAY
 2021-06-09 CYS A:109 A:349 1.0 0.007 E -80.0 101.4 1.0 0.007 0.0 GOL
TAR
GOL
HOH
 8.748
8.376
7.221
5.231
 N
CB
O
SG
 O2
O4
H32
O
6m64 1 Q15796 99.51 5e-152 X-RAY
 2020-11-25 CYS A:90 A:349 0.0 0.0 E -83.0 103.6 0.0 0.0 0.0 HOH
 3.604
 O
 O
CYS C:90 C:349 0.0 0.0 E -87.1 104.1 0.0 0.0 0.0 HOH
 3.606
 O
 O
CYS E:90 E:349 0.0 0.0 E -84.2 100.5 0.0 0.0 0.0 HOH
 5.163
 SG
 O
7co1 1 Q15796 99.51 5e-152 X-RAY
 2020-11-25 CYS A:90 A:349 1.0 0.007 E -89.4 94.6 1.0 0.007 0.0
CYS C:90 C:349 2.0 0.015 E -89.0 94.5 2.0 0.015 0.0
CYS E:90 E:349 1.0 0.007 E -89.1 95.3 1.0 0.007 0.0
1mk2 1 P84022 96.6 8e-150 X-RAY
 2002-10-16 CYS A:88 A:306 0.0 0.0 E -73.9 104.0 0.0 0.0 0.0
1u7v 1 Q15796 100.0 2e-147 X-RAY
 2004-09-28 CYS A:80 A:349 1.0 0.007 E -89.4 95.6 1.0 0.007 0.0
CYS B:80 C:349 0.0 0.0 E -74.7 102.9 0.0 0.0 0.0
5xod 1 Q15796 100.0 2e-146 X-RAY
 2018-03-28 CYS A:90 A:349 0.0 0.0 E -89.6 102.7 0.0 0.0 0.0 HOH
 5.318
 SG
 O
5zoj 1 Q15796 100.0 3e-146 X-RAY
 2018-10-10 CYS A:91 A:349 0.0 0.0 E -83.2 106.7 0.0 0.0 0.0
CYS B:91 B:349 0.0 0.0 E -85.1 106.2 0.0 0.0 0.0
CYS C:91 C:349 1.0 0.007 E -85.6 106.2 1.0 0.007 0.0
1dev 1 Q15796 100.0 7e-146 X-RAY
 2000-01-21 CYS A:89 A:349 0.0 0.0 E -82.0 106.8 0.0 0.0 0.0
CYS C:89 C:349 0.0 0.0 E -82.0 111.7 NA NA NA
1u7f 1 P84022 96.97 2e-144 X-RAY
 2004-09-28 CYS A:80 A:307 1.0 0.007 E -94.8 98.7 1.0 0.007 0.0 HOH
 7.036
 C
 O
CYS C:80 C:307 0.0 0.0 E -75.3 101.2 0.0 0.0 0.0 HOH
 4.619
 SG
 O
1mjs 1 P84022 96.95 1e-143 X-RAY
 2002-10-16 CYS A:79 A:306 0.0 0.0 E -81.7 108.0 0.0 0.0 0.0 HOH
 5.092
 SG
 O
5xoc 1 P84022 97.46 2e-143 X-RAY
 2018-03-28 CYS A:90 A:307 1.0 0.007 E -82.1 101.5 1.0 0.007 0.0 HOH
 5.092
 SG
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q15796-f1 1 Q15796 100.0 0.0 CYS A:349 A:349 0.0 0.0 E -78.9 105.4
af-p84022-f1 1 P84022 83.94 0.0 CYS A:307 A:307 0.0 0.0 E -77.1 102.6