Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr18 45374902 . C A CCDS11934.1:NM_001003652.3:c.941gGt>gTt_NP_001003652.1:p.314G>V Homo sapiens SMAD family member 2 (SMAD2), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1khx 1 Q15796 100.0 1e-169 X-RAY
 2002-02-06 GLY A:74 A:314 24.0 0.32 G -65.0 -25.1 3.0 0.04 0.28 A:Q15796:0.28
 HOH
 2.539
 O
 O
6zvq 1 Q15796 100.0 1e-169 X-RAY
 2021-06-09 GLY A:74 A:314 27.0 0.36 G -67.6 -19.7 2.0 0.027 0.333 A:Q15796:0.333
 GOL
GOL
GOL
TAR
HOH
 6.535
7.550
7.728
3.600
3.234
 N
O
O
O
CA
 O2
H31
O1
O1
O
6m64 1 Q15796 99.51 5e-152 X-RAY
 2020-11-25 GLY A:55 A:314 24.0 0.32 G -65.1 -23.5 3.0 0.04 0.28 C:Q15796:0.28
 HOH
 3.435
 CA
 O
GLY C:55 C:314 27.0 0.36 G -68.6 -20.6 8.0 0.107 0.253 E:Q15796:0.253
 HOH
 2.767
 O
 O
GLY E:55 E:314 24.0 0.32 G -66.9 -20.1 2.0 0.027 0.293 A:Q15796:0.293
 HOH
 2.762
 O
 O
7co1 1 Q15796 99.51 5e-152 X-RAY
 2020-11-25 GLY A:55 A:314 23.0 0.307 T -61.9 -23.3 2.0 0.027 0.28 C:Q15796:0.28
GLY C:55 C:314 25.0 0.333 T -61.7 -23.6 5.0 0.067 0.266 E:Q15796:0.267
GLY E:55 E:314 23.0 0.307 T -62.9 -24.0 5.0 0.067 0.24 A:Q15796:0.24
1mk2 1 P84022 96.6 8e-150 X-RAY
 2002-10-16 GLY A:53 A:271 18.0 0.24 T -56.6 -31.7 18.0 0.24 0.0
1u7v 1 Q15796 100.0 2e-147 X-RAY
 2004-09-28 GLY A:45 A:314 22.0 0.293 T -58.6 -24.9 3.0 0.04 0.253 B:Q15796:0.253
GLY B:45 C:314 22.0 0.293 T -55.6 -31.8 0.0 0.0 0.293 C:Q13485:0.293
5xod 1 Q15796 100.0 2e-146 X-RAY
 2018-03-28 GLY A:55 A:314 26.0 0.347 T -69.2 -23.4 2.0 0.027 0.32 A:Q15796:0.32
 HOH
 6.287
 CA
 O
5zoj 1 Q15796 100.0 3e-146 X-RAY
 2018-10-10 GLY A:56 A:314 30.0 0.4 T -68.8 -19.6 8.0 0.107 0.293 B:Q15796:0.293
GLY B:56 B:314 29.0 0.387 T -67.5 -19.1 8.0 0.107 0.28 C:Q15796:0.28
GLY C:56 C:314 29.0 0.387 T -68.5 -19.6 10.0 0.133 0.254 A:Q15796:0.253
1dev 1 Q15796 100.0 7e-146 X-RAY
 2000-01-21 GLY A:54 A:314 12.0 0.16 T -46.2 -35.1 12.0 0.16 0.0
GLY C:54 C:314 16.0 0.213 T -55.2 -32.3 NA NA NA
1u7f 1 P84022 96.97 2e-144 X-RAY
 2004-09-28 GLY A:45 A:272 23.0 0.307 G -62.8 -18.0 4.0 0.053 0.254 C:P84022:0.253
 HOH
 3.937
 CA
 O
GLY C:45 C:272 23.0 0.307 T -55.2 -38.7 2.0 0.027 0.28 B:Q13485:0.28
 HOH
 6.037
 C
 O
1mjs 1 P84022 96.95 1e-143 X-RAY
 2002-10-16 GLY A:44 A:271 14.0 0.187 S -66.7 -32.7 14.0 0.187 0.0 HOH
 2.891
 O
 O
5xoc 1 P84022 97.46 2e-143 X-RAY
 2018-03-28 GLY A:55 A:272 24.0 0.32 T -65.8 -30.7 11.0 0.147 0.173 A:P84022:0.173
 HOH
 6.510
 CA
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q15796-f1 1 Q15796 100.0 0.0 GLY A:314 A:314 26.0 0.347 G -62.3 -31.4
af-p84022-f1 1 P84022 83.94 0.0 GLY A:272 A:272 25.0 0.333 G -63.4 -31.6