Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr18 52555295 . C A CCDS11958.1:NM_004163.4:c.413cCa>cAa_NP_004154.2:p.138P>Q Homo sapiens RAB27B, member RAS oncogene family (RAB27B), mRNA.
pdb_id: 
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label_comp_id: 
auth_asym_id: 
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alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
2iez 1 Q99P58 94.04 2e-156 X-RAY
 2007-05-01 PRO A:140 A:138 67.0 0.462 G -80.3 -15.7 67.0 0.462 0.0 GDP
HOH
 8.405
6.751
 N
O
 N2
O
PRO B:140 B:138 90.0 0.621 G -61.5 -35.7 NA NA NA
PRO C:140 H:138 68.0 0.469 -72.0 -46.2 NA NA NA
PRO D:140 I:138 92.0 0.634 G -56.8 -37.1 NA NA NA
2f7s 1 O00194 100.0 2e-149 X-RAY
 2005-12-20 PRO A:154 A:138 94.0 0.648 G -64.5 -24.5 94.0 0.648 0.0 GDP
 8.117
 N
 N2
PRO B:154 B:138 92.0 0.634 T -64.3 -37.2 92.0 0.634 0.0 GDP
HOH
 8.233
3.794
 CD
N
 N2
O
2zet 1 Q99P58 95.02 1e-144 X-RAY
 2008-09-30 PRO A:140 A:138 94.0 0.648 G -62.2 -22.7 94.0 0.648 0.0 GTP
 8.424
 N
 N2
PRO C:140 B:138 92.0 0.634 G -51.0 -38.6 NA NA NA
2if0 1 Q99P58 94.95 3e-142 X-RAY
 2007-05-01 PRO A:140 A:138 97.0 0.669 G -63.4 -30.4 97.0 0.669 0.0 GDP
 8.365
 N
 N2
PRO B:140 B:138 91.0 0.628 G -66.0 -44.5 NA NA NA
2iey 1 Q99P58 95.34 2e-138 X-RAY
 2007-05-01 PRO A:140 A:138 89.0 0.614 S -69.8 -32.3 89.0 0.614 0.0 GDP
 8.561
 N
 N2
PRO B:140 B:138 93.0 0.641 S -82.3 0.8 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-o00194-f1 1 O00194 100.0 4e-166 PRO A:138 A:138 86.0 0.593 G -61.5 -34.2