Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr18 52556468 . G A CCDS11958.1:NM_004163.4:c.481Gaa>Aaa_NP_004154.2:p.161E>K Homo sapiens RAB27B, member RAS oncogene family (RAB27B), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
2iez 1 Q99P58 94.04 2e-156 X-RAY
 2007-05-01 GLU A:163 A:161 65.0 0.342 E -78.6 96.8 65.0 0.342 0.0 GDP
 8.601
 C
 O6
GLU B:163 B:161 32.0 0.168 E -107.6 127.8 NA NA NA
GLU C:163 H:161 39.0 0.205 E -77.9 115.2 NA NA NA
GLU D:163 I:161 24.0 0.126 E -89.3 117.9 NA NA NA
2f7s 1 O00194 100.0 2e-149 X-RAY
 2005-12-20 GLU A:177 A:161 33.0 0.174 E -92.0 126.9 33.0 0.174 0.0 GDP
 8.600
 C
 O6
GLU B:177 B:161 30.0 0.158 E -101.9 119.3 30.0 0.158 0.0 GDP
 8.616
 C
 O6
2zet 1 Q99P58 95.02 1e-144 X-RAY
 2008-09-30 GLU A:163 A:161 41.0 0.216 E -83.4 125.4 41.0 0.216 0.0 GTP
 8.524
 C
 O6
GLU C:163 B:161 33.0 0.174 E -102.0 115.0 NA NA NA
2if0 1 Q99P58 94.95 3e-142 X-RAY
 2007-05-01 GLU A:163 A:161 33.0 0.174 E -107.8 116.5 33.0 0.174 0.0 GDP
HOH
 8.505
7.891
 C
N
 O6
O
GLU B:163 B:161 30.0 0.158 E -101.8 116.6 NA NA NA
2iey 1 Q99P58 95.34 2e-138 X-RAY
 2007-05-01 GLU A:163 A:161 29.0 0.153 E -93.7 118.7 29.0 0.153 0.0 GDP
HOH
 8.440
7.192
 C
N
 O6
O
GLU B:163 B:161 26.0 0.137 E -85.6 122.9 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-o00194-f1 1 O00194 100.0 4e-166 GLU A:161 A:161 25.0 0.132 E -87.6 126.5