Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr19 36633826 . G A CCDS12489.1:NM_001003962.1:c.349Gcc>Acc_NP_001003962.1:p.117A>T Homo sapiens calpain, small subunit 1 (CAPNS1), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1kfu 2 P04632 100.0 1e-140 X-RAY
 2001-12-07 ALA B:33 S:817 13.0 0.113 H -74.7 -43.0 11.0 0.096 0.017 A:P17655:0.017
 HOH
 8.370
 C
 O
1kfx 2 P04632 100.0 1e-140 X-RAY
 2001-12-07 ALA B:33 S:817 9.0 0.078 H -54.1 -52.3 9.0 0.078 0.0 HOH
 9.227
 O
 O
4phj 1 P04632 100.0 2e-131 X-RAY
 2014-08-13 ALA A:22 A:117 15.0 0.13 H -60.0 -39.7 15.0 0.13 0.0 CA
HOH
 7.647
2.994
 N
N
 CA
O
ALA B:22 B:117 13.0 0.113 H -59.6 -39.3 13.0 0.113 0.0 CA
HOH
 7.663
2.981
 N
N
 CA
O
4phk 1 P04632 100.0 2e-131 X-RAY
 2014-08-13 ALA A:22 A:117 13.0 0.113 H -58.7 -39.1 13.0 0.113 0.0 CA
HOH
 7.580
3.441
 N
N
 CA
O
ALA B:22 B:117 15.0 0.13 H -49.5 -49.2 15.0 0.13 0.0 CA
HOH
 7.607
2.865
 N
N
 CA
O
4phm 1 P04632 100.0 2e-131 X-RAY
 2014-08-13 ALA A:22 A:117 13.0 0.113 H -61.9 -32.0 13.0 0.113 0.0 CA
HOH
 7.674
3.623
 N
N
 CA
O
ALA B:22 B:117 14.0 0.122 H -54.3 -47.0 14.0 0.122 0.0 CA
HOH
 7.532
2.939
 N
N
 CA
O
4wq2 1 P04632 100.0 2e-131 X-RAY
 2015-09-02 ALA A:22 A:117 15.0 0.13 H -57.4 -40.4 15.0 0.13 0.0 CA
EDO
HOH
 7.596
4.367
2.865
 N
CB
N
 CA
O1
O
ALA B:22 B:117 10.0 0.087 H -61.5 -37.7 10.0 0.087 0.0 CA
EDO
HOH
 7.593
8.929
2.837
 N
C
N
 CA
O1
O
4wq3 1 P04632 100.0 2e-131 X-RAY
 2015-09-02 ALA A:22 A:117 16.0 0.139 H -60.7 -35.6 16.0 0.139 0.0 CA
HOH
 7.629
2.937
 N
N
 CA
O
ALA B:22 B:117 14.0 0.122 H -51.7 -41.7 14.0 0.122 0.0 CA
HOH
 7.654
2.897
 N
N
 CA
O
5d69 1 P04632 100.0 2e-131 X-RAY
 2015-09-02 ALA A:22 A:117 14.0 0.122 H -56.3 -39.4 14.0 0.122 0.0 CA
HOH
 7.708
2.844
 N
N
 CA
O
ALA B:22 B:117 13.0 0.113 H -59.0 -38.0 13.0 0.113 0.0 CA
HOH
 7.625
3.038
 N
N
 CA
O
1df0 2 Q64537 92.35 6e-129 X-RAY
 2000-06-21 ALA B:33 B:33 10.0 0.087 H -75.2 -34.0 10.0 0.087 0.0 HOH
 3.160
 N
 O
1u5i 2 Q64537 92.35 6e-129 X-RAY
 2005-01-18 ALA B:33 B:33 9.0 0.078 H -52.4 -71.7 8.0 0.07 0.008 A:Q07009:0.009
 HOH
 2.848
 N
 O
3bow 2 Q64537 92.35 6e-129 X-RAY
 2008-11-25 ALA B:33 B:119 4.0 0.035 H -57.0 -43.4 0.0 0.0 0.035 A:Q07009:0.035
 CA
CA
HOH
 7.636
9.700
6.229
 N
N
CB
 CA
CA
O
3df0 2 Q64537 92.35 6e-129 X-RAY
 2008-11-11 ALA B:33 B:119 19.0 0.165 H -46.1 -41.9 16.0 0.139 0.026 A:Q07009:0.026
 CA
 7.562
 N
 CA
1dvi 1 Q64537 91.8 7e-128 X-RAY
 1998-05-27 ALA A:33 A:119 17.0 0.148 H -61.1 -36.6 17.0 0.148 0.0 CA
HOH
 7.603
3.079
 N
N
 CA
O
ALA B:33 B:119 17.0 0.148 H -64.1 -36.6 17.0 0.148 0.0 CA
HOH
 7.676
2.882
 N
N
 CA
O
1alv 1 P04574 97.11 8e-126 X-RAY
 1998-06-03 ALA A:22 A:115 14.0 0.122 H -59.9 -33.9 14.0 0.122 0.0 CA
HOH
 7.675
1.545
 N
H
 CA
H2
ALA B:22 B:115 16.0 0.139 H -62.0 -36.8 16.0 0.139 0.0 CA
HOH
 7.657
1.349
 N
H
 CA
H1
1alw 1 P04574 97.11 8e-126 X-RAY
 1998-06-10 ALA A:22 A:115 13.0 0.113 H -58.9 -40.4 13.0 0.113 0.0 CA
HOH
 7.639
3.017
 N
N
 CA
O
ALA B:22 B:115 14.0 0.122 H -67.1 -38.3 14.0 0.122 0.0 CA
HOH
 7.581
2.724
 N
N
 CA
O
1nx0 1 P04574 97.11 8e-126 X-RAY
 2003-08-19 ALA A:22 A:115 13.0 0.113 H -62.6 -40.0 13.0 0.113 0.0 CA
CA
HOH
 7.707
9.857
2.783
 N
N
N
 CA
CA
O
ALA B:22 B:415 14.0 0.122 H -61.7 -44.2 14.0 0.122 0.0 CA
HOH
 7.539
3.145
 N
N
 CA
O
1nx1 1 P04574 97.11 8e-126 X-RAY
 2003-08-19 ALA A:22 A:115 14.0 0.122 H -61.4 -34.7 14.0 0.122 0.0 CA
HOH
 7.149
2.972
 N
N
 CA
O
ALA B:22 B:415 15.0 0.13 H -56.8 -44.9 15.0 0.13 0.0 CA
CA
HOH
 7.257
9.938
2.925
 N
N
N
 CA
CA
O
1nx2 1 P04574 97.11 8e-126 X-RAY
 2003-08-19 ALA A:22 A:115 12.0 0.104 H -64.3 -36.4 12.0 0.104 0.0 CA
HOH
 7.609
2.941
 N
N
 CA
O
1nx3 1 P04574 97.11 8e-126 X-RAY
 2003-08-19 ALA A:22 A:115 10.0 0.087 H -68.8 -43.1 10.0 0.087 0.0 CA
HOH
 7.513
2.979
 N
N
 CA
O
4phn 1 P04574 97.11 8e-126 X-RAY
 2014-08-13 ALA A:22 A:115 13.0 0.113 H -58.6 -38.4 13.0 0.113 0.0 CA
HOH
 7.778
3.020
 N
N
 CA
O
ALA B:22 B:115 18.0 0.157 H -49.9 -47.9 18.0 0.157 0.0 CA
HOH
 7.802
3.057
 N
N
 CA
O
6qlb 1 P04632 92.49 1e-121 X-RAY
 2020-02-05 ALA A:22 A:22 14.0 0.122 H -58.4 -42.3 14.0 0.122 0.0 CA
HOH
 7.384
6.686
 N
N
 CA
O
ALA B:22 B:22 13.0 0.113 H -57.5 -41.1 13.0 0.113 0.0 EDO
CA
HOH
 8.966
7.585
3.632
 CB
N
N
 O1
CA
O
ALA C:22 C:22 12.0 0.104 H -57.9 -41.9 12.0 0.104 0.0 CA
HOH
 7.571
5.992
 N
N
 CA
O
ALA D:22 D:22 11.0 0.096 H -63.3 -39.9 11.0 0.096 0.0 CA
HOH
 7.227
5.433
 N
CB
 CA
O
1aj5 1 Q64537 91.91 2e-120 X-RAY
 1998-05-20 ALA A:22 A:119 12.0 0.104 H -60.8 -44.0 12.0 0.104 0.0 HOH
 3.832
 CB
 O
ALA B:22 B:119 14.0 0.122 H -60.3 -44.4 NA NA NA
1qxp 1 Q07009,P97571,505658 91.76 2e-117 X-RAY
 2004-02-03 ALA A:749 A:742 19.0 0.165 H -62.4 -34.1 19.0 0.165 0.0 HOH
 6.707
 C
 O
ALA B:749 B:742 23.0 0.2 S -80.9 -25.9 NA NA NA
1np8 1 Q64537 91.82 2e-109 X-RAY
 2003-11-18 ALA A:29 A:33 13.0 0.113 H -60.4 -37.3 13.0 0.113 0.0 CD
HOH
 7.488
2.914
 N
N
 CD
O
ALA B:29 B:533 13.0 0.113 H -64.4 -34.0 13.0 0.113 0.0 CD
HOH
 7.507
3.070
 N
N
 CD
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p04632-f1 1 P04632 100.0 0.0 ALA A:117 A:117 14.0 0.122 H -58.0 -33.6