Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr19 36636881 . A C CCDS12489.1:NM_001003962.1:c.529Ata>Cta_NP_001003962.1:p.177I>L Homo sapiens calpain, small subunit 1 (CAPNS1), transcript variant 1, mRNA.
pdb_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id
alphafold_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1kfu 2 P04632 100.0 1e-140 X-RAY
2001-12-07 ILE B:93 S:877 16.0 0.091 H -56.0 -34.2 16.0 0.091 0.0 HOH
2.549
CG1
O
1kfx 2 P04632 100.0 1e-140 X-RAY
2001-12-07 ILE B:93 S:877 16.0 0.091 H -18.0 -61.6 16.0 0.091 0.0 HOH
7.133
CG1
O
4phj 1 P04632 100.0 2e-131 X-RAY
2014-08-13 ILE A:82 A:177 15.0 0.086 H -64.0 -46.3 15.0 0.086 0.0 CA
HOH
9.454
3.559
O
CG1
CA
O
ILE B:82 B:177 20.0 0.114 H -59.5 -45.4 20.0 0.114 0.0 CA
HOH
9.481
3.618
O
CG1
CA
O
4phk 1 P04632 100.0 2e-131 X-RAY
2014-08-13 ILE A:82 A:177 18.0 0.103 H -73.2 -36.1 18.0 0.103 0.0 2UB
CA
HOH
9.625
9.442
3.437
N
O
CG1
CAF
CA
O
ILE B:82 B:177 15.0 0.086 H -65.3 -42.1 15.0 0.086 0.0 2UB
CA
HOH
9.476
9.541
4.206
N
O
N
CAA
CA
O
4phm 1 P04632 100.0 2e-131 X-RAY
2014-08-13 ILE A:82 A:177 16.0 0.091 H -72.1 -42.4 16.0 0.091 0.0 2UD
CA
HOH
9.089
9.648
3.503
N
O
CG1
CAC
CA
O
ILE B:82 B:177 17.0 0.097 H -63.1 -46.1 17.0 0.097 0.0 2UD
CA
HOH
8.797
9.397
3.352
N
O
CG1
OAO
CA
O
4wq2 1 P04632 100.0 2e-131 X-RAY
2015-09-02 ILE A:82 A:177 1.0 0.006 H -61.6 -49.0 1.0 0.006 0.0 3SU
CA
HOH
9.020
9.532
4.898
N
O
N
CAI
CA
O
ILE B:82 B:177 13.0 0.074 H -61.8 -48.0 13.0 0.074 0.0 3SU
CA
HOH
8.651
9.548
3.684
N
O
CG1
OAM
CA
O
4wq3 1 P04632 100.0 2e-131 X-RAY
2015-09-02 ILE A:82 A:177 16.0 0.091 H -62.5 -41.0 16.0 0.091 0.0 CA
3SU
HOH
9.459
9.218
3.624
O
N
CG1
CA
CAK
O
ILE B:82 B:177 0.0 0.0 H -61.0 -48.5 0.0 0.0 0.0 CA
3SU
HOH
9.502
9.159
4.719
O
N
N
CA
CAI
O
5d69 1 P04632 100.0 2e-131 X-RAY
2015-09-02 ILE A:82 A:177 15.0 0.086 H -62.9 -45.1 15.0 0.086 0.0 CA
57T
HOH
9.553
9.141
3.692
O
N
CG1
CA
CAU
O
ILE B:82 B:177 15.0 0.086 H -59.1 -47.3 15.0 0.086 0.0 CA
57T
HOH
9.612
9.079
4.604
O
N
N
CA
CAD
O
1df0 2 Q64537 92.35 6e-129 X-RAY
2000-06-21 ILE B:93 B:93 22.0 0.126 H -59.5 -46.1 22.0 0.126 0.0 HOH
7.467
N
O
1u5i 2 Q64537 92.35 6e-129 X-RAY
2005-01-18 ILE B:93 B:93 17.0 0.097 H -85.4 -29.6 17.0 0.097 0.0 HOH
4.252
N
O
3bow 2 Q64537 92.35 6e-129 X-RAY
2008-11-25 ILE B:93 B:179 10.0 0.057 H -53.6 -51.0 10.0 0.057 0.0 CA
HOH
9.671
9.605
O
CD1
CA
O
3df0 2 Q64537 92.35 6e-129 X-RAY
2008-11-11 ILE B:93 B:179 9.0 0.051 H -60.7 -32.0 9.0 0.051 0.0 CA
9.539
O
CA
1dvi 1 Q64537 91.8 7e-128 X-RAY
1998-05-27 ILE A:93 A:179 12.0 0.069 H -65.7 -42.6 12.0 0.069 0.0 CA
HOH
9.392
4.741
O
N
CA
O
ILE B:93 B:179 13.0 0.074 H -61.2 -39.7 13.0 0.074 0.0 CA
HOH
9.225
5.638
O
CD1
CA
O
1alv 1 P04574 97.11 8e-126 X-RAY
1998-06-03 ILE A:82 A:175 12.0 0.069 H -67.8 -39.8 12.0 0.069 0.0 CA
9.553
O
CA
ILE B:82 B:175 13.0 0.074 H -61.3 -42.6 13.0 0.074 0.0 CA
HOH
9.587
4.618
O
N
CA
H1
1alw 1 P04574 97.11 8e-126 X-RAY
1998-06-10 ILE A:82 A:175 13.0 0.074 H -77.8 -38.2 13.0 0.074 0.0 CA
ISA
HOH
9.648
9.627
6.535
O
N
CD1
CA
CD2
O
ILE B:82 B:175 13.0 0.074 H -65.9 -37.6 13.0 0.074 0.0 CA
ISA
HOH
9.712
9.380
4.802
O
N
N
CA
CD2
O
1nx0 1 P04574 97.11 8e-126 X-RAY
2003-08-19 ILE A:82 A:175 11.0 0.063 H -66.1 -37.3 11.0 0.063 0.0 CA
HOH
9.515
3.666
O
CD1
CA
O
ILE B:82 B:475 17.0 0.097 H -61.9 -38.4 17.0 0.097 0.0 CA
HOH
9.482
3.666
O
CG1
CA
O
1nx1 1 P04574 97.11 8e-126 X-RAY
2003-08-19 ILE A:82 A:175 13.0 0.074 H -65.9 -40.7 13.0 0.074 0.0 CA
HOH
9.608
3.674
O
CG1
CA
O
ILE B:82 B:475 13.0 0.074 H -58.4 -40.6 13.0 0.074 0.0 CA
HOH
9.366
6.324
O
N
CA
O
1nx2 1 P04574 97.11 8e-126 X-RAY
2003-08-19 ILE A:82 A:175 14.0 0.08 H -68.5 -41.3 14.0 0.08 0.0 CA
HOH
9.571
4.848
O
N
CA
O
1nx3 1 P04574 97.11 8e-126 X-RAY
2003-08-19 ILE A:82 A:175 17.0 0.097 H -62.5 -32.8 17.0 0.097 0.0 CA
ISA
HOH
9.577
9.794
4.563
O
N
CD1
CA
CD2
O
4phn 1 P04574 97.11 8e-126 X-RAY
2014-08-13 ILE A:82 A:175 11.0 0.063 H -65.0 -44.6 11.0 0.063 0.0 CA
HOH
9.465
3.657
O
CD1
CA
O
ILE B:82 B:175 16.0 0.091 H -59.2 -45.3 16.0 0.091 0.0 CA
HOH
9.627
3.709
O
N
CA
O
6qlb 1 P04632 92.49 1e-121 X-RAY
2020-02-05 ILE A:82 A:82 4.0 0.023 H -68.0 -43.3 4.0 0.023 0.0 CA
HOH
9.515
4.169
O
CG1
CA
O
ILE B:82 B:82 5.0 0.029 H -69.6 -41.7 5.0 0.029 0.0 CA
HOH
9.541
3.915
O
N
CA
O
ILE C:82 C:82 17.0 0.097 H -69.8 -42.5 17.0 0.097 0.0 CA
HOH
9.805
3.840
O
N
CA
O
ILE D:82 D:82 13.0 0.074 H -69.1 -42.8 13.0 0.074 0.0 CA
HOH
9.707
9.515
O
N
CA
O
1aj5 1 Q64537 91.91 2e-120 X-RAY
1998-05-20 ILE A:82 A:179 5.0 0.029 H -65.6 -34.9 5.0 0.029 0.0 HOH
3.949
N
O
ILE B:82 B:179 17.0 0.097 H -61.7 -43.2 NA NA NA
1qxp 1 Q07009,P97571,505658 91.76 2e-117 X-RAY
2004-02-03 ILE A:809 A:802 27.0 NA -160.6 108.5 27.0 NA NA HOH
5.532
N
O
ILE B:809 B:802 71.0 0.406 -54.6 360.0 NA NA NA
1np8 1 Q64537 91.82 2e-109 X-RAY
2003-11-18 ILE A:89 A:93 9.0 0.051 H -63.2 -46.9 9.0 0.051 0.0 CD
HOH
9.147
3.685
O
CG1
CD
O
ILE B:89 B:593 0.0 0.0 H -66.3 -45.8 0.0 0.0 0.0 CD
HOH
9.134
3.700
O
CG1
CD
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p04632-f1 1 P04632 100.0 0.0 ILE A:177 A:177 11.0 0.063 H -61.6 -46.8