Variant
Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr19 | 36636881 | . | A | C | CCDS12489.1:NM_001003962.1:c.529Ata>Cta_NP_001003962.1:p.177I>L | Homo sapiens calpain, small subunit 1 (CAPNS1), transcript variant 1, mRNA. |
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PDB
Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
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PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
1kfu | 2 | P04632 | 100.0 | 1e-140 |
X-RAY |
2001-12-07 | ILE | B:93 | S:877 | 16.0 | 0.091 | H | -56.0 | -34.2 | 16.0 | 0.091 | 0.0 |
HOH |
2.549 |
CG1 |
O |
||
1kfx | 2 | P04632 | 100.0 | 1e-140 |
X-RAY |
2001-12-07 | ILE | B:93 | S:877 | 16.0 | 0.091 | H | -18.0 | -61.6 | 16.0 | 0.091 | 0.0 |
HOH |
7.133 |
CG1 |
O |
||
4phj | 1 | P04632 | 100.0 | 2e-131 |
X-RAY |
2014-08-13 | ILE | A:82 | A:177 | 15.0 | 0.086 | H | -64.0 | -46.3 | 15.0 | 0.086 | 0.0 |
CA HOH |
9.454 3.559 |
O CG1 |
CA O |
||
ILE | B:82 | B:177 | 20.0 | 0.114 | H | -59.5 | -45.4 | 20.0 | 0.114 | 0.0 |
CA HOH |
9.481 3.618 |
O CG1 |
CA O |
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4phk | 1 | P04632 | 100.0 | 2e-131 |
X-RAY |
2014-08-13 | ILE | A:82 | A:177 | 18.0 | 0.103 | H | -73.2 | -36.1 | 18.0 | 0.103 | 0.0 |
2UB CA HOH |
9.625 9.442 3.437 |
N O CG1 |
CAF CA O |
||
ILE | B:82 | B:177 | 15.0 | 0.086 | H | -65.3 | -42.1 | 15.0 | 0.086 | 0.0 |
2UB CA HOH |
9.476 9.541 4.206 |
N O N |
CAA CA O |
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4phm | 1 | P04632 | 100.0 | 2e-131 |
X-RAY |
2014-08-13 | ILE | A:82 | A:177 | 16.0 | 0.091 | H | -72.1 | -42.4 | 16.0 | 0.091 | 0.0 |
2UD CA HOH |
9.089 9.648 3.503 |
N O CG1 |
CAC CA O |
||
ILE | B:82 | B:177 | 17.0 | 0.097 | H | -63.1 | -46.1 | 17.0 | 0.097 | 0.0 |
2UD CA HOH |
8.797 9.397 3.352 |
N O CG1 |
OAO CA O |
|||||||||
4wq2 | 1 | P04632 | 100.0 | 2e-131 |
X-RAY |
2015-09-02 | ILE | A:82 | A:177 | 1.0 | 0.006 | H | -61.6 | -49.0 | 1.0 | 0.006 | 0.0 |
3SU CA HOH |
9.020 9.532 4.898 |
N O N |
CAI CA O |
||
ILE | B:82 | B:177 | 13.0 | 0.074 | H | -61.8 | -48.0 | 13.0 | 0.074 | 0.0 |
3SU CA HOH |
8.651 9.548 3.684 |
N O CG1 |
OAM CA O |
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4wq3 | 1 | P04632 | 100.0 | 2e-131 |
X-RAY |
2015-09-02 | ILE | A:82 | A:177 | 16.0 | 0.091 | H | -62.5 | -41.0 | 16.0 | 0.091 | 0.0 |
CA 3SU HOH |
9.459 9.218 3.624 |
O N CG1 |
CA CAK O |
||
ILE | B:82 | B:177 | 0.0 | 0.0 | H | -61.0 | -48.5 | 0.0 | 0.0 | 0.0 |
CA 3SU HOH |
9.502 9.159 4.719 |
O N N |
CA CAI O |
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5d69 | 1 | P04632 | 100.0 | 2e-131 |
X-RAY |
2015-09-02 | ILE | A:82 | A:177 | 15.0 | 0.086 | H | -62.9 | -45.1 | 15.0 | 0.086 | 0.0 |
CA 57T HOH |
9.553 9.141 3.692 |
O N CG1 |
CA CAU O |
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ILE | B:82 | B:177 | 15.0 | 0.086 | H | -59.1 | -47.3 | 15.0 | 0.086 | 0.0 |
CA 57T HOH |
9.612 9.079 4.604 |
O N N |
CA CAD O |
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1df0 | 2 | Q64537 | 92.35 | 6e-129 |
X-RAY |
2000-06-21 | ILE | B:93 | B:93 | 22.0 | 0.126 | H | -59.5 | -46.1 | 22.0 | 0.126 | 0.0 |
HOH |
7.467 |
N |
O |
||
1u5i | 2 | Q64537 | 92.35 | 6e-129 |
X-RAY |
2005-01-18 | ILE | B:93 | B:93 | 17.0 | 0.097 | H | -85.4 | -29.6 | 17.0 | 0.097 | 0.0 |
HOH |
4.252 |
N |
O |
||
3bow | 2 | Q64537 | 92.35 | 6e-129 |
X-RAY |
2008-11-25 | ILE | B:93 | B:179 | 10.0 | 0.057 | H | -53.6 | -51.0 | 10.0 | 0.057 | 0.0 |
CA HOH |
9.671 9.605 |
O CD1 |
CA O |
||
3df0 | 2 | Q64537 | 92.35 | 6e-129 |
X-RAY |
2008-11-11 | ILE | B:93 | B:179 | 9.0 | 0.051 | H | -60.7 | -32.0 | 9.0 | 0.051 | 0.0 |
CA |
9.539 |
O |
CA |
||
1dvi | 1 | Q64537 | 91.8 | 7e-128 |
X-RAY |
1998-05-27 | ILE | A:93 | A:179 | 12.0 | 0.069 | H | -65.7 | -42.6 | 12.0 | 0.069 | 0.0 |
CA HOH |
9.392 4.741 |
O N |
CA O |
||
ILE | B:93 | B:179 | 13.0 | 0.074 | H | -61.2 | -39.7 | 13.0 | 0.074 | 0.0 |
CA HOH |
9.225 5.638 |
O CD1 |
CA O |
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1alv | 1 | P04574 | 97.11 | 8e-126 |
X-RAY |
1998-06-03 | ILE | A:82 | A:175 | 12.0 | 0.069 | H | -67.8 | -39.8 | 12.0 | 0.069 | 0.0 |
CA |
9.553 |
O |
CA |
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ILE | B:82 | B:175 | 13.0 | 0.074 | H | -61.3 | -42.6 | 13.0 | 0.074 | 0.0 |
CA HOH |
9.587 4.618 |
O N |
CA H1 |
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1alw | 1 | P04574 | 97.11 | 8e-126 |
X-RAY |
1998-06-10 | ILE | A:82 | A:175 | 13.0 | 0.074 | H | -77.8 | -38.2 | 13.0 | 0.074 | 0.0 |
CA ISA HOH |
9.648 9.627 6.535 |
O N CD1 |
CA CD2 O |
||
ILE | B:82 | B:175 | 13.0 | 0.074 | H | -65.9 | -37.6 | 13.0 | 0.074 | 0.0 |
CA ISA HOH |
9.712 9.380 4.802 |
O N N |
CA CD2 O |
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1nx0 | 1 | P04574 | 97.11 | 8e-126 |
X-RAY |
2003-08-19 | ILE | A:82 | A:175 | 11.0 | 0.063 | H | -66.1 | -37.3 | 11.0 | 0.063 | 0.0 |
CA HOH |
9.515 3.666 |
O CD1 |
CA O |
||
ILE | B:82 | B:475 | 17.0 | 0.097 | H | -61.9 | -38.4 | 17.0 | 0.097 | 0.0 |
CA HOH |
9.482 3.666 |
O CG1 |
CA O |
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1nx1 | 1 | P04574 | 97.11 | 8e-126 |
X-RAY |
2003-08-19 | ILE | A:82 | A:175 | 13.0 | 0.074 | H | -65.9 | -40.7 | 13.0 | 0.074 | 0.0 |
CA HOH |
9.608 3.674 |
O CG1 |
CA O |
||
ILE | B:82 | B:475 | 13.0 | 0.074 | H | -58.4 | -40.6 | 13.0 | 0.074 | 0.0 |
CA HOH |
9.366 6.324 |
O N |
CA O |
|||||||||
1nx2 | 1 | P04574 | 97.11 | 8e-126 |
X-RAY |
2003-08-19 | ILE | A:82 | A:175 | 14.0 | 0.08 | H | -68.5 | -41.3 | 14.0 | 0.08 | 0.0 |
CA HOH |
9.571 4.848 |
O N |
CA O |
||
1nx3 | 1 | P04574 | 97.11 | 8e-126 |
X-RAY |
2003-08-19 | ILE | A:82 | A:175 | 17.0 | 0.097 | H | -62.5 | -32.8 | 17.0 | 0.097 | 0.0 |
CA ISA HOH |
9.577 9.794 4.563 |
O N CD1 |
CA CD2 O |
||
4phn | 1 | P04574 | 97.11 | 8e-126 |
X-RAY |
2014-08-13 | ILE | A:82 | A:175 | 11.0 | 0.063 | H | -65.0 | -44.6 | 11.0 | 0.063 | 0.0 |
CA HOH |
9.465 3.657 |
O CD1 |
CA O |
||
ILE | B:82 | B:175 | 16.0 | 0.091 | H | -59.2 | -45.3 | 16.0 | 0.091 | 0.0 |
CA HOH |
9.627 3.709 |
O N |
CA O |
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6qlb | 1 | P04632 | 92.49 | 1e-121 |
X-RAY |
2020-02-05 | ILE | A:82 | A:82 | 4.0 | 0.023 | H | -68.0 | -43.3 | 4.0 | 0.023 | 0.0 |
CA HOH |
9.515 4.169 |
O CG1 |
CA O |
||
ILE | B:82 | B:82 | 5.0 | 0.029 | H | -69.6 | -41.7 | 5.0 | 0.029 | 0.0 |
CA HOH |
9.541 3.915 |
O N |
CA O |
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ILE | C:82 | C:82 | 17.0 | 0.097 | H | -69.8 | -42.5 | 17.0 | 0.097 | 0.0 |
CA HOH |
9.805 3.840 |
O N |
CA O |
|||||||||
ILE | D:82 | D:82 | 13.0 | 0.074 | H | -69.1 | -42.8 | 13.0 | 0.074 | 0.0 |
CA HOH |
9.707 9.515 |
O N |
CA O |
|||||||||
1aj5 | 1 | Q64537 | 91.91 | 2e-120 |
X-RAY |
1998-05-20 | ILE | A:82 | A:179 | 5.0 | 0.029 | H | -65.6 | -34.9 | 5.0 | 0.029 | 0.0 |
HOH |
3.949 |
N |
O |
||
ILE | B:82 | B:179 | 17.0 | 0.097 | H | -61.7 | -43.2 | NA | NA | NA | |||||||||||||
1qxp | 1 | Q07009,P97571,505658 | 91.76 | 2e-117 |
X-RAY |
2004-02-03 | ILE | A:809 | A:802 | 27.0 | NA | -160.6 | 108.5 | 27.0 | NA | NA |
HOH |
5.532 |
N |
O |
|||
ILE | B:809 | B:802 | 71.0 | 0.406 | -54.6 | 360.0 | NA | NA | NA | ||||||||||||||
1np8 | 1 | Q64537 | 91.82 | 2e-109 |
X-RAY |
2003-11-18 | ILE | A:89 | A:93 | 9.0 | 0.051 | H | -63.2 | -46.9 | 9.0 | 0.051 | 0.0 |
CD HOH |
9.147 3.685 |
O CG1 |
CD O |
||
ILE | B:89 | B:593 | 0.0 | 0.0 | H | -66.3 | -45.8 | 0.0 | 0.0 | 0.0 |
CD HOH |
9.134 3.700 |
O CG1 |
CD O |
AlphaFold DB
Entity | Residue | Monomer | View | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
af-p04632-f1 | 1 | P04632 | 100.0 | 0.0 | ILE | A:177 | A:177 | 11.0 | 0.063 | H | -61.6 | -46.8 |