Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr19 36640524 . G A CCDS12489.1:NM_001003962.1:c.766Gtg>Atg_NP_001003962.1:p.256V>M Homo sapiens calpain, small subunit 1 (CAPNS1), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1kfu 2 P04632 100.0 1e-140 X-RAY
 2001-12-07 VAL B:172 S:956 48.0 0.31 -134.4 142.9 1.0 0.006 0.304 A:P17655:0.303
 HOH
 4.558
 C
 O
1kfx 2 P04632 100.0 1e-140 X-RAY
 2001-12-07 VAL B:172 S:956 41.0 0.265 -129.5 152.5 0.0 0.0 0.265 A:P17655:0.265
 HOH
 4.560
 CA
 O
4phj 1 P04632 100.0 2e-131 X-RAY
 2014-08-13 VAL A:161 A:256 52.0 0.335 -139.4 155.3 3.0 0.019 0.316 B:P04632:0.316
 HOH
 3.559
 CG1
 O
VAL B:161 B:256 65.0 0.419 -121.9 122.1 0.0 0.0 0.419 A:P04632:0.419
 HOH
 5.234
 N
 O
4phk 1 P04632 100.0 2e-131 X-RAY
 2014-08-13 VAL A:161 A:256 52.0 0.335 -138.2 152.2 3.0 0.019 0.316 B:P04632:0.316
 HOH
 3.560
 CA
 O
VAL B:161 B:256 58.0 0.374 -128.6 121.3 0.0 0.0 0.374 A:P04632:0.374
 HOH
 4.931
 N
 O
4phm 1 P04632 100.0 2e-131 X-RAY
 2014-08-13 VAL A:161 A:256 51.0 0.329 -140.3 151.6 4.0 0.026 0.303 B:P04632:0.303
 HOH
 3.567
 C
 O
VAL B:161 B:256 66.0 0.426 -122.1 123.0 0.0 0.0 0.426 A:P04632:0.426
 HOH
 5.456
 N
 O
4wq2 1 P04632 100.0 2e-131 X-RAY
 2015-09-02 VAL A:161 A:256 55.0 0.355 -126.7 128.9 0.0 0.0 0.355 B:P04632:0.355
 HOH
 5.430
 N
 O
VAL B:161 B:256 51.0 0.329 -140.4 149.5 5.0 0.032 0.297 A:P04632:0.297
 HOH
 3.923
 CA
 O
4wq3 1 P04632 100.0 2e-131 X-RAY
 2015-09-02 VAL A:161 A:256 53.0 0.342 -140.9 153.0 5.0 0.032 0.31 B:P04632:0.31
 HOH
 3.983
 C
 O
VAL B:161 B:256 62.0 0.4 -120.3 116.0 0.0 0.0 0.4 A:P04632:0.4
 HOH
 5.037
 N
 O
5d69 1 P04632 100.0 2e-131 X-RAY
 2015-09-02 VAL A:161 A:256 52.0 0.335 -135.4 144.3 3.0 0.019 0.316 B:P04632:0.316
 HOH
 5.637
 O
 O
VAL B:161 B:256 56.0 0.361 -115.4 135.3 0.0 0.0 0.361 A:P04632:0.361
 HOH
 5.208
 N
 O
1df0 2 Q64537 92.35 6e-129 X-RAY
 2000-06-21 VAL B:172 B:172 54.0 0.348 -145.6 145.4 1.0 0.006 0.342 A:Q07009:0.342
 HOH
 5.405
 CG1
 O
1u5i 2 Q64537 92.35 6e-129 X-RAY
 2005-01-18 VAL B:172 B:172 50.0 0.323 -123.1 136.0 0.0 0.0 0.323 A:Q07009:0.323
 HOH
 3.857
 CA
 O
3bow 2 Q64537 92.35 6e-129 X-RAY
 2008-11-25 VAL B:172 B:258 56.0 0.361 -117.8 147.5 2.0 0.013 0.348 A:Q07009:0.348
 HOH
 5.669
 O
 O
3df0 2 Q64537 92.35 6e-129 X-RAY
 2008-11-11 VAL B:172 B:258 61.0 0.394 -139.7 162.6 6.0 0.039 0.355 A:Q07009:0.355
1dvi 1 Q64537 91.8 7e-128 X-RAY
 1998-05-27 VAL A:172 A:258 49.0 0.316 -134.8 151.0 2.0 0.013 0.303 B:Q64537:0.303
 HOH
 5.332
 N
 O
VAL B:172 B:258 50.0 0.323 -136.1 147.7 2.0 0.013 0.31 A:Q64537:0.31
 HOH
 5.608
 N
 O
1alv 1 P04574 97.11 8e-126 X-RAY
 1998-06-03 VAL A:161 A:254 50.0 0.323 -144.1 146.4 1.0 0.006 0.317 B:P04574:0.316
 HOH
 4.782
 O
 H2
VAL B:161 B:254 59.0 0.381 -131.3 126.5 0.0 0.0 0.381 A:P04574:0.381
 HOH
 5.643
 N
 O
1alw 1 P04574 97.11 8e-126 X-RAY
 1998-06-10 VAL A:161 A:254 52.0 0.335 -148.6 141.7 1.0 0.006 0.329 B:P04574:0.329
 HOH
 5.703
 O
 O
VAL B:161 B:254 58.0 0.374 -133.3 130.0 0.0 0.0 0.374 A:P04574:0.374
 HOH
 9.699
 N
 O
1nx0 1 P04574 97.11 8e-126 X-RAY
 2003-08-19 VAL A:161 A:254 47.0 0.303 -150.0 144.1 0.0 0.0 0.303 B:P04574:0.303
 HOH
 9.530
 CG2
 O
VAL B:161 B:554 51.0 0.329 -130.8 144.0 1.0 0.006 0.323 A:P04574:0.323
 HOH
 7.339
 C
 O
1nx1 1 P04574 97.11 8e-126 X-RAY
 2003-08-19 VAL A:161 A:254 55.0 0.355 -135.2 146.1 5.0 0.032 0.323 B:P04574:0.323
 HOH
 5.591
 N
 O
VAL B:161 B:554 50.0 0.323 -140.4 147.8 2.0 0.013 0.31 A:P04574:0.31
 HOH
 3.524
 CA
 O
1nx2 1 P04574 97.11 8e-126 X-RAY
 2003-08-19 VAL A:161 A:254 47.0 0.303 -134.0 153.5 2.0 0.013 0.29 A:P04574:0.29
 HOH
 5.148
 N
 O
1nx3 1 P04574 97.11 8e-126 X-RAY
 2003-08-19 VAL A:161 A:254 49.0 0.316 -136.4 150.7 4.0 0.026 0.29 A:P04574:0.29
 HOH
 5.196
 N
 O
4phn 1 P04574 97.11 8e-126 X-RAY
 2014-08-13 VAL A:161 A:254 62.0 0.4 -118.5 122.7 0.0 0.0 0.4 B:P04574:0.4
 HOH
 5.408
 N
 O
VAL B:161 B:254 51.0 0.329 -146.2 142.2 3.0 0.019 0.31 A:P04574:0.31
 HOH
 3.775
 CA
 O
6qlb 1 P04632 92.49 1e-121 X-RAY
 2020-02-05 VAL A:161 A:161 46.0 0.297 -138.6 145.0 0.0 0.0 0.297 B:P04632:0.297
 CA
CA
HOH
 9.451
7.528
4.032
 N
O
CA
 CA
CA
O
VAL B:161 B:161 53.0 0.342 -135.5 142.7 0.0 0.0 0.342 A:P04632:0.342
 CA
CA
HOH
 7.129
9.579
3.946
 O
N
C
 CA
CA
O
VAL C:161 C:161 50.0 0.323 -135.2 142.9 0.0 0.0 0.323 D:P04632:0.323
 CA
CA
HOH
 9.504
7.665
6.102
 N
O
O
 CA
CA
O
VAL D:161 D:161 56.0 0.361 -131.4 141.6 1.0 0.006 0.355 C:P04632:0.355
F:A0A376T1I0:0.006
 CA
CA
HOH
 7.547
9.828
6.968
 O
N
O
 CA
CA
O
1aj5 1 Q64537 91.91 2e-120 X-RAY
 1998-05-20 VAL A:161 A:258 50.0 0.323 -135.6 145.5 0.0 0.0 0.323 A:Q64537:0.323
 HOH
 4.339
 C
 O
VAL B:161 B:258 55.0 0.355 -129.7 143.9 NA NA NA
1qxp 1 Q07009,P97571,505658 91.76 2e-117 X-RAY
 2004-02-03 VAL A:888 A:881 2.0 0.013 E -158.9 153.3 2.0 0.013 0.0 HOH
 6.690
 CA
 O
VAL B:888 B:881 5.0 0.032 E -135.4 -173.2 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p04632-f1 1 P04632 100.0 0.0 VAL A:256 A:256 48.0 0.31 -133.9 147.8