Variant
| Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr19 | 41848114 | . | A | C | CCDS33031.1:NM_000660.4:c.673Tgt>Ggt_NP_000651.3:p.225C>G | Homo sapiens transforming growth factor, beta 1 (TGFB1), mRNA. |
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PDB
| Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
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| PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
| 5ffo | 3 | P01137 | 99.17 | 0.0 |
X-RAY |
2017-01-25 | CYS | C:198 | C:196 | 176.0 | 1.0 | -138.7 | 360.0 | 51.0 | 0.378 | 0.622 |
D:P01137:0.926 |
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| CYS | D:198 | D:196 | 115.0 | 0.852 | -131.4 | 162.9 | 39.0 | 0.289 | 0.563 |
C:P01137:0.563 |
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| CYS | G:198 | G:196 | 177.0 | 1.0 | -135.9 | 360.0 | 29.0 | 0.215 | 0.785 |
H:P01137:1.0 |
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| CYS | H:198 | H:196 | 99.0 | 0.733 | T | -126.8 | -176.2 | 16.0 | 0.119 | 0.614 |
G:P01137:0.615 |
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| 5vqp | 1 | P01137 | 99.17 | 0.0 |
X-RAY |
2017-11-15 | CYS | A:198 | A:196 | 84.0 | 0.622 | E | -137.5 | 124.7 | 16.0 | 0.119 | 0.503 |
A:P01137:0.504 |
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| 6uja | 3 | P07200 | 94.18 | 0.0 |
EM |
2020-02-05 | CYS | C:198 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA | ||||||
| 3rjr | 1 | P07200 | 93.63 | 0.0 |
X-RAY |
2011-06-15 | CYS | A:198 | A:196 | 75.0 | 0.556 | E | -131.7 | 143.4 | 9.0 | 0.067 | 0.489 |
B:P07200:0.489 |
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| CYS | B:198 | B:196 | 74.0 | 0.548 | E | -131.5 | 143.3 | 13.0 | 0.096 | 0.452 |
A:P07200:0.452 |
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| CYS | C:198 | C:196 | 75.0 | 0.556 | E | -131.8 | 143.6 | NA | NA | NA | |||||||||||||
| CYS | D:198 | D:196 | 75.0 | 0.556 | E | -131.5 | 143.2 | NA | NA | NA | |||||||||||||
| 5vqf | 1 | P07200 | 93.63 | 0.0 |
X-RAY |
2017-11-15 | CYS | A:198 | A:196 | 76.0 | 0.563 | E | -148.0 | 160.3 | 16.0 | 0.119 | 0.444 |
B:P07200:0.444 |
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| CYS | B:198 | B:196 | 76.0 | 0.563 | E | -148.7 | 162.7 | 11.0 | 0.081 | 0.482 |
A:P07200:0.481 |
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| CYS | C:198 | C:196 | 74.0 | 0.548 | E | -147.9 | 161.3 | NA | NA | NA | |||||||||||||
| CYS | D:198 | D:196 | 76.0 | 0.563 | E | -148.9 | 163.3 | NA | NA | NA | |||||||||||||
| 6gff | 1 | P01137 | 100.0 | 0.0 |
X-RAY |
2018-11-07 | CYS | A:196 | A:225 | 187.0 | 1.0 | -64.3 | 360.0 | 85.0 | 0.63 | 0.37 |
C:P01137:0.756 |
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| CYS | C:196 | C:225 | 146.0 | 1.0 | T | -55.0 | -26.8 | 92.0 | 0.681 | 0.319 |
A:P01137:0.4 |
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| CYS | E:196 | E:225 | 104.0 | 0.77 | T | -57.8 | -33.8 | NA | NA | NA | |||||||||||||
| CYS | G:196 | G:225 | 143.0 | 1.0 | S | -58.7 | -35.9 | NA | NA | NA | |||||||||||||
| 6p7j | 1 | P01137 | 100.0 | 0.0 |
X-RAY |
2020-03-11 | CYS | A:196 | A:195 | 95.0 | 0.704 | E | -108.2 | 124.0 | 9.0 | 0.067 | 0.637 |
A:P01137:0.637 |
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AlphaFold DB
| Entity | Residue | Monomer | View | ||||||||||
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| ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
| af-p01137-f1 | 1 | P01137 | 99.74 | 0.0 | CYS | A:225 | A:225 | 134.0 | 0.993 | S | -71.9 | -25.4 | |