Variant
| Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr19 | 41848120 | . | A | C | CCDS33031.1:NM_000660.4:c.667Tgc>Ggc_NP_000651.3:p.223C>G | Homo sapiens transforming growth factor, beta 1 (TGFB1), mRNA. |
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PDB
| Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
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| PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
| 5ffo | 3 | P01137 | 99.17 | 0.0 |
X-RAY |
2017-01-25 | CYS | C:196 | C:194 | 73.0 | 0.541 | -113.7 | 116.4 | 6.0 | 0.044 | 0.497 |
D:P01137:0.496 |
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| CYS | D:196 | D:194 | 74.0 | 0.548 | -119.6 | 108.8 | 9.0 | 0.067 | 0.481 |
C:P01137:0.481 |
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| CYS | G:196 | G:194 | 66.0 | 0.489 | -118.4 | 114.2 | 2.0 | 0.015 | 0.474 |
H:P01137:0.474 |
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| CYS | H:196 | H:194 | 57.0 | 0.422 | -118.6 | 111.4 | 3.0 | 0.022 | 0.4 |
G:P01137:0.4 |
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| 5vqp | 1 | P01137 | 99.17 | 0.0 |
X-RAY |
2017-11-15 | CYS | A:196 | A:194 | 64.0 | 0.474 | E | -118.6 | 151.9 | 0.0 | 0.0 | 0.474 |
A:P01137:0.474 |
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| 6uja | 3 | P07200 | 94.18 | 0.0 |
EM |
2020-02-05 | CYS | C:196 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA | ||||||
| 3rjr | 1 | P07200 | 93.63 | 0.0 |
X-RAY |
2011-06-15 | CYS | A:196 | A:194 | 61.0 | 0.452 | E | -124.0 | 81.8 | 3.0 | 0.022 | 0.43 |
B:P07200:0.43 |
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| CYS | B:196 | B:194 | 59.0 | 0.437 | E | -123.9 | 81.9 | 3.0 | 0.022 | 0.415 |
A:P07200:0.415 |
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| CYS | C:196 | C:194 | 61.0 | 0.452 | E | -124.1 | 81.7 | NA | NA | NA | |||||||||||||
| CYS | D:196 | D:194 | 59.0 | 0.437 | E | -123.9 | 82.0 | NA | NA | NA | |||||||||||||
| 5vqf | 1 | P07200 | 93.63 | 0.0 |
X-RAY |
2017-11-15 | CYS | A:196 | A:194 | 74.0 | 0.548 | -96.5 | 127.3 | 3.0 | 0.022 | 0.526 |
B:P07200:0.526 |
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| CYS | B:196 | B:194 | 76.0 | 0.563 | E | -97.1 | 125.8 | 3.0 | 0.022 | 0.541 |
A:P07200:0.541 |
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| CYS | C:196 | C:194 | 73.0 | 0.541 | E | -97.0 | 126.6 | NA | NA | NA | |||||||||||||
| CYS | D:196 | D:194 | 74.0 | 0.548 | E | -97.0 | 127.4 | NA | NA | NA | |||||||||||||
| 6gff | 1 | P01137 | 100.0 | 0.0 |
X-RAY |
2018-11-07 | CYS | A:194 | A:223 | 119.0 | 0.881 | -118.4 | 118.2 | 37.0 | 0.274 | 0.607 |
C:P01137:0.607 |
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| CYS | C:194 | C:223 | 76.0 | 0.563 | -127.8 | 108.3 | 13.0 | 0.096 | 0.467 |
A:P01137:0.467 |
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| CYS | E:194 | E:223 | 45.0 | 0.333 | -129.4 | 111.7 | NA | NA | NA | ||||||||||||||
| CYS | G:194 | G:223 | 56.0 | 0.415 | -127.4 | 111.9 | NA | NA | NA | ||||||||||||||
| 6p7j | 1 | P01137 | 100.0 | 0.0 |
X-RAY |
2020-03-11 | CYS | A:194 | A:193 | 55.0 | 0.407 | E | -119.2 | 117.9 | 2.0 | 0.015 | 0.392 |
A:P01137:0.393 |
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AlphaFold DB
| Entity | Residue | Monomer | View | ||||||||||
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| ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
| af-p01137-f1 | 1 | P01137 | 99.74 | 0.0 | CYS | A:223 | A:223 | 81.0 | 0.6 | -86.5 | 106.8 | ||