Variant
| Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr19 | 41858700 | . | T | A | CCDS33031.1:NM_000660.4:c.250Acc>Tcc_NP_000651.3:p.84T>S | Homo sapiens transforming growth factor, beta 1 (TGFB1), mRNA. |
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PDB
| Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
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| PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
| 5ffo | 3 | P01137 | 99.17 | 0.0 |
X-RAY |
2017-01-25 | THR | C:57 | C:55 | 59.0 | 0.421 | H | -86.5 | -35.2 | 11.0 | 0.079 | 0.342 |
D:P01137:0.343 |
NAG |
9.281 |
N |
C1 |
|
| THR | D:57 | D:55 | 37.0 | 0.264 | H | -80.6 | -35.8 | 6.0 | 0.043 | 0.221 |
C:P01137:0.221 |
NAG |
9.332 |
N |
C1 |
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| THR | G:57 | G:55 | 59.0 | 0.421 | H | -87.3 | -31.6 | 10.0 | 0.071 | 0.35 |
H:P01137:0.35 |
NAG |
9.336 |
N |
O5 |
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| THR | H:57 | H:55 | 39.0 | 0.279 | H | -82.4 | -31.0 | 3.0 | 0.021 | 0.258 |
G:P01137:0.257 |
NAG |
9.302 |
N |
C1 |
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| 5vqp | 1 | P01137 | 99.17 | 0.0 |
X-RAY |
2017-11-15 | THR | A:57 | A:55 | 41.0 | 0.293 | H | -89.7 | -23.0 | 1.0 | 0.007 | 0.286 |
A:P01137:0.286 |
NAG |
9.057 |
N |
C1 |
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| 6uja | 3 | P07200 | 94.18 | 0.0 |
EM |
2020-02-05 | THR | C:57 | D:55 | 94.0 | NA | T | -70.8 | -8.4 | 94.0 | NA | NA | ||||||
| 3rjr | 1 | P07200 | 93.63 | 0.0 |
X-RAY |
2011-06-15 | THR | A:57 | A:55 | 49.0 | 0.35 | H | -58.8 | -52.6 | 14.0 | 0.1 | 0.25 |
B:P07200:0.25 |
NAG |
9.196 |
N |
C1 |
|
| THR | B:57 | B:55 | 49.0 | 0.35 | H | -58.8 | -52.6 | 14.0 | 0.1 | 0.25 |
A:P07200:0.25 |
NAG |
9.152 |
N |
C1 |
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| THR | C:57 | C:55 | 50.0 | 0.357 | H | -58.7 | -52.7 | NA | NA | NA | |||||||||||||
| THR | D:57 | D:55 | 50.0 | 0.357 | H | -58.8 | -52.7 | NA | NA | NA | |||||||||||||
| 5vqf | 1 | P07200 | 93.63 | 0.0 |
X-RAY |
2017-11-15 | THR | A:57 | A:55 | 68.0 | 0.486 | H | -62.5 | -29.9 | 26.0 | 0.186 | 0.3 |
B:P07200:0.3 |
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| THR | B:57 | B:55 | 65.0 | 0.464 | H | -64.8 | -32.8 | 22.0 | 0.157 | 0.307 |
A:P07200:0.307 |
NAG |
8.984 |
N |
C1 |
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| THR | C:57 | C:55 | 56.0 | 0.4 | H | -66.8 | -32.1 | NA | NA | NA | |||||||||||||
| THR | D:57 | D:55 | 48.0 | 0.343 | H | -65.8 | -32.1 | NA | NA | NA | |||||||||||||
| 6gff | 1 | P01137 | 100.0 | 0.0 |
X-RAY |
2018-11-07 | THR | A:55 | A:84 | 63.0 | 0.45 | H | -79.9 | -39.2 | 22.0 | 0.157 | 0.293 |
D:P01137:0.293 |
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| THR | C:55 | C:84 | 48.0 | 0.343 | H | -75.2 | -41.9 | 12.0 | 0.086 | 0.257 |
B:P01137:0.257 |
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| THR | E:55 | E:84 | 48.0 | 0.343 | H | -76.8 | -42.7 | NA | NA | NA | |||||||||||||
| THR | G:55 | G:84 | 51.0 | 0.364 | H | -74.7 | -42.9 | NA | NA | NA | |||||||||||||
| 6p7j | 1 | P01137 | 100.0 | 0.0 |
X-RAY |
2020-03-11 | THR | A:55 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA | ||||||
AlphaFold DB
| Entity | Residue | Monomer | View | ||||||||||
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| ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
| af-p01137-f1 | 1 | P01137 | 99.74 | 0.0 | THR | A:84 | A:84 | 24.0 | 0.171 | H | -67.0 | -42.4 | |