Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr19 8464902 . G A CCDS12201.1:NM_004218.3:c.196Gac>Aac_NP_004209.2:p.66D>N Homo sapiens RAB11B, member RAS oncogene family (RAB11B), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
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label_comp_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
4ojk 1 Q15907 100.0 3e-146 X-RAY
 2014-08-06 ASP A:61 A:66 13.0 0.087 E -94.0 129.4 13.0 0.087 0.0 GDP
HOH
 4.119
7.069
 OD2
OD2
 O2B
O
ASP B:61 B:66 27.0 0.18 E -130.7 140.5 NA NA NA
5fbl 2 P62491 91.28 1e-145 X-RAY
 2016-12-28 ASP B:71 B:66 5.0 0.033 E -94.1 106.2 5.0 0.033 0.0 GSP
 2.709
 OD1
 O2G
5fbq 2 P62491 91.28 1e-145 X-RAY
 2016-12-28 ASP B:71 B:66 6.0 0.04 E -94.6 106.5 6.0 0.04 0.0 GDP
 3.873
 OD1
 O2B
2f9l 1 Q15907 99.49 2e-145 X-RAY
 2006-04-04 ASP A:60 A:66 2.0 0.013 E -139.3 163.0 2.0 0.013 0.0 MG
GDP
HOH
 4.012
4.699
2.599
 OD2
OD1
OD1
 MG
O3B
O
2f9m 1 Q15907 99.49 2e-145 X-RAY
 2006-04-04 ASP A:60 A:66 0.0 0.0 E -147.3 142.8 0.0 0.0 0.0 MG
GNP
HOH
 3.914
4.562
2.622
 OD2
OD1
OD2
 MG
O2B
O
5fbr 2 P62491 90.83 2e-144 X-RAY
 2016-12-28 ASP B:71 B:66 0.0 0.0 E -93.4 106.5 0.0 0.0 0.0 GSP
 4.872
 OD1
 O3B
5fbv 2 P62491 90.83 2e-144 X-RAY
 2016-12-28 ASP B:71 B:66 0.0 0.0 E -93.8 101.8 0.0 0.0 0.0 GSP
 4.168
 OD1
 O1B
5fbw 2 P62491 90.83 2e-144 X-RAY
 2016-12-28 ASP B:71 B:66 2.0 0.013 E -88.0 161.4 2.0 0.013 0.0 GSP
 4.038
 OD2
 O1B
4d0l 2 P62491 90.83 3e-144 X-RAY
 2014-05-28 ASP B:69 B:66 2.0 0.013 E -88.6 104.8 2.0 0.013 0.0 GSP
MG
HOH
 4.399
3.739
2.499
 OD1
OD2
OD1
 O2B
MG
O
ASP D:69 D:66 1.0 0.007 E -87.6 102.7 NA NA NA
ASP F:69 F:66 2.0 0.013 E -86.7 102.4 NA NA NA
4d0m 2 P62491 90.83 3e-144 X-RAY
 2014-05-28 ASP B:69 B:66 2.0 0.013 E -90.4 106.3 2.0 0.013 0.0 GSP
MG
 4.694
3.927
 OD1
OD2
 O2B
MG
ASP D:69 D:66 3.0 0.02 E -89.6 106.0 3.0 0.02 0.0 GSP
MG
 4.565
3.624
 OD1
OD2
 O2B
MG
ASP H:69 H:66 3.0 0.02 E -90.1 106.8 NA NA NA
ASP J:69 J:66 3.0 0.02 E -90.5 106.1 NA NA NA
ASP N:69 N:66 3.0 0.02 E -90.1 106.0 NA NA NA
ASP P:69 P:66 3.0 0.02 E -90.0 106.5 3.0 0.02 0.0 GSP
MG
 4.486
3.711
 OD1
OD2
 O2B
MG
ASP R:69 R:66 3.0 0.02 E -90.2 106.0 NA NA NA
ASP T:69 T:66 3.0 0.02 E -89.9 106.5 3.0 0.02 0.0 GSP
MG
 4.662
3.827
 OD1
OD2
 O2B
MG
ASP X:69 X:66 3.0 0.02 E -89.8 106.6 NA NA NA
ASP Z:69 Z:66 3.0 0.02 E -90.2 105.9 NA NA NA
ASP DA:69 d:66 3.0 0.02 E -90.0 106.1 NA NA NA
ASP HA:69 h:66 3.0 0.02 E -89.3 106.2 NA NA NA
5c46 2 P62491 90.83 3e-144 X-RAY
 2016-01-20 ASP B:69 F:66 0.0 0.0 E -73.7 108.0 0.0 0.0 0.0 GSP
MG
HOH
 4.190
3.764
6.899
 OD2
OD2
OD2
 O3G
MG
O
5c4g 1 P62491 90.83 3e-144 X-RAY
 2016-01-20 ASP A:69 B:66 16.0 0.107 E -148.3 136.4 16.0 0.107 0.0 MG
GDP
 4.948
4.791
 OD2
OD2
 MG
O3B
5euq 1 P62491 90.83 3e-144 X-RAY
 2016-02-24 ASP A:69 B:66 9.0 0.06 E -152.8 148.1 9.0 0.06 0.0 GDP
 4.642
 OD1
 O1B
6djl 1 P62491 90.83 3e-144 X-RAY
 2018-09-26 ASP A:69 A:66 0.0 0.0 E -105.7 129.0 0.0 0.0 0.0
ASP F:69 F:66 1.0 0.007 -84.5 171.7 NA NA NA
ASP G:69 G:66 3.0 0.02 E -103.5 141.2 NA NA NA
ASP H:69 H:66 5.0 0.033 E -104.7 141.2 NA NA NA
4uj4 1 P62491 95.63 9e-128 X-RAY
 2015-08-12 ASP A:65 A:66 0.0 0.0 E -137.5 147.0 NA NA NA
ASP D:65 D:66 0.0 0.0 E -138.2 147.5 0.0 0.0 0.0 GNP
MG
 4.790
3.210
 OD1
OD1
 O3G
MG
ASP G:65 G:66 2.0 0.013 E -136.6 147.5 2.0 0.013 0.0 GNP
MG
 5.015
3.296
 OD1
OD1
 O2B
MG
ASP J:65 J:66 0.0 0.0 E -137.6 147.7 NA NA NA
4uj3 1 P62491 95.08 3e-127 X-RAY
 2015-08-12 ASP A:67 A:66 0.0 0.0 E -137.6 147.0 0.0 0.0 0.0 GNP
MG
HOH
 4.793
3.903
7.721
 OD1
OD2
OD2
 O2B
MG
O
ASP D:67 D:66 1.0 0.007 E -137.9 147.7 NA NA NA
ASP G:67 G:66 1.0 0.007 E -136.7 147.4 NA NA NA
ASP J:67 J:66 0.0 0.0 E -137.8 147.6 NA NA NA
ASP M:67 M:66 2.0 0.013 E -135.7 147.5 NA NA NA
ASP P:67 P:66 1.0 0.007 E -137.2 146.4 NA NA NA
ASP S:67 S:66 1.0 0.007 E -136.1 147.9 NA NA NA
ASP V:67 V:66 2.0 0.013 E -135.0 145.5 NA NA NA
5jcz 1 P62491 97.74 3e-126 X-RAY
 2016-09-28 ASP A:68 A:66 3.0 0.02 E -139.4 138.3 3.0 0.02 0.0 MG
GDP
BEF
EDO
GOL
HOH
 4.011
4.861
5.492
6.716
8.702
2.630
 OD2
OD1
OD1
C
OD2
OD1
 MG
O1B
F3
C1
O3
O
ASP D:68 D:66 0.0 0.0 E -142.9 138.3 NA NA NA
ASP F:68 I:66 2.0 0.013 E -139.8 138.0 NA NA NA
4lwz 1 P62491 97.74 3e-126 X-RAY
 2013-11-20 ASP A:66 A:66 1.0 0.007 E -136.6 163.6 1.0 0.007 0.0 GDP
MG
HOH
 4.664
4.000
2.803
 OD2
OD2
OD1
 O1B
MG
O
ASP C:66 C:66 1.0 0.007 E -143.3 140.9 NA NA NA
4lx0 1 P62491 97.74 3e-126 X-RAY
 2013-11-20 ASP A:66 A:66 5.0 0.033 E -97.5 127.5 5.0 0.033 0.0 MG
BEF
GDP
HOH
 3.886
5.452
4.729
2.476
 OD2
OD1
OD1
OD1
 MG
F3
O1B
O
ASP C:66 C:66 4.0 0.027 E -97.3 129.9 NA NA NA
4uj5 1 P62491 94.54 8e-126 X-RAY
 2015-08-12 ASP A:65 A:66 0.0 0.0 E -145.6 142.4 0.0 0.0 0.0 GNP
MG
HOH
 4.731
3.699
2.699
 OD1
OD2
OD1
 O2B
MG
O
ASP B:65 B:66 3.0 0.02 E -145.4 141.6 NA NA NA
4c4p 1 P62491 97.69 2e-123 X-RAY
 2013-09-18 ASP A:66 A:66 1.0 0.007 E -144.3 144.8 1.0 0.007 0.0 GNP
MG
HOH
 4.959
3.934
2.506
 OD1
OD2
OD2
 O2B
MG
O
6ixv 2 P62491 97.69 2e-123 X-RAY
 2019-03-20 ASP E:68 E:66 11.0 0.073 -74.6 178.7 11.0 0.073 0.0 PO4
 4.599
 OD1
 O1
ASP F:68 F:66 13.0 0.087 -67.2 165.6 NA NA NA
ASP G:68 G:66 15.0 0.1 -69.5 166.2 NA NA NA
ASP H:68 H:66 10.0 0.067 -63.7 162.0 NA NA NA
1oiv 1 P24410 97.69 8e-123 X-RAY
 2004-01-08 ASP A:84 A:66 1.0 0.007 E -138.4 156.9 1.0 0.007 0.0 GDP
HOH
 4.151
2.477
 OD2
OD2
 O3B
O
ASP B:84 B:66 0.0 0.0 E -144.7 158.3 0.0 0.0 0.0 GDP
HOH
 4.118
2.741
 OD2
OD2
 O3B
O
2gzd 1 P62491 97.11 4e-122 X-RAY
 2006-08-15 ASP A:66 A:66 0.0 0.0 E -133.4 135.3 0.0 0.0 0.0 MG
GTP
HOH
 3.636
4.805
4.899
 OD2
OD2
OD1
 MG
O2B
O
ASP B:66 B:66 0.0 0.0 E -136.7 144.2 0.0 0.0 0.0 MG
GTP
HOH
 3.437
4.619
2.481
 OD2
OD1
OD2
 MG
O2B
O
2gzh 1 P62491 97.11 4e-122 X-RAY
 2006-08-15 ASP A:66 A:66 0.0 0.0 E -140.2 152.1 0.0 0.0 0.0 MG
MG
GTP
HOH
 4.152
7.914
4.788
2.523
 OD2
C
OD1
OD2
 MG
MG
O2B
O
1oiw 1 P24410 97.11 2e-121 X-RAY
 2004-01-08 ASP A:84 A:66 4.0 0.027 E -138.7 146.1 4.0 0.027 0.0 GSP
MG
HOH
 4.891
3.912
2.511
 OD2
OD1
OD2
 O2B
MG
O
1oix 1 P24410 97.11 2e-121 X-RAY
 2005-01-25 ASP A:84 A:66 1.0 0.007 E -142.7 146.0 1.0 0.007 0.0 GDP
PO4
MG
HOH
 4.803
5.451
4.016
2.559
 OD2
OD2
OD1
OD1
 O3B
O1
MG
O
2hv8 1 P62491 97.06 3e-119 X-RAY
 2006-11-21 ASP A:63 A:66 0.0 0.0 E -148.2 140.7 0.0 0.0 0.0 MG
GTP
HOH
 4.025
4.639
2.617
 OD2
OD1
OD1
 MG
O2B
O
ASP C:63 B:66 0.0 0.0 E -147.4 141.4 NA NA NA
ASP E:63 C:66 1.0 0.007 E -146.8 141.1 NA NA NA
6iy1 3 P62491 97.62 4e-119 X-RAY
 2019-12-18 ASP F:61 F:66 1.0 0.007 E -141.1 146.3 NA NA NA
1yzk 1 P62491 97.62 1e-118 X-RAY
 2005-07-26 ASP A:75 A:66 0.0 0.0 E -150.3 143.9 0.0 0.0 0.0 MG
GNP
HOH
 4.050
4.770
2.582
 OD2
OD1
OD2
 MG
O2B
O
6iy1 2 P62491 97.6 3e-118 X-RAY
 2019-12-18 ASP D:60 D:66 0.0 0.0 E -139.1 160.3 NA NA NA
5ez5 1 P62491 97.02 4e-118 X-RAY
 2016-12-07 ASP A:59 A:66 0.0 0.0 E -149.8 152.7 0.0 0.0 0.0 MG
GTP
HOH
 3.799
4.860
5.264
 OD2
OD1
OD2
 MG
O1B
O
ASP B:59 B:66 0.0 0.0 E -147.1 150.8 0.0 0.0 0.0 MG
GTP
HOH
 3.630
4.753
4.995
 OD2
OD2
OD2
 MG
O2B
O
2d7c 1 P62491 97.01 5e-117 X-RAY
 2006-09-26 ASP A:60 A:66 1.0 0.007 E -145.3 151.3 1.0 0.007 0.0 MG
GTP
HOH
 3.871
4.728
2.528
 OD1
OD2
OD2
 MG
O2B
O
ASP B:60 B:66 1.0 0.007 E -146.0 148.1 NA NA NA
6iy1 1 P62491 97.58 2e-116 X-RAY
 2019-12-18 ASP A:58 A:66 1.0 0.007 E -139.3 146.5 1.0 0.007 0.0 GDP
HOH
 4.268
2.605
 OD2
OD2
 O3B
O
ASP B:58 B:66 0.0 0.0 E -136.3 150.5 NA NA NA
ASP C:58 C:66 1.0 0.007 E -134.7 155.3 NA NA NA
ASP E:58 E:66 0.0 0.0 E -144.9 156.2 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q15907-f1 1 Q15907 100.0 1e-164 ASP A:66 A:66 0.0 0.0 E -88.2 114.1
af-p62491-f1 1 P62491 91.28 6e-146 ASP A:66 A:66 0.0 0.0 E -85.0 117.6