Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr19 11446174 . C A CCDS12257.1:NM_004283.3:c.421Gac>Tac_NP_004274.1:p.141D>Y Homo sapiens RAB3D, member RAS oncogene family (RAB3D), mRNA.
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alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
2gf9 1 O95716 100.0 6e-127 X-RAY
 2006-05-02 ASP A:141 A:141 164.0 1.0 G -64.1 -16.9 164.0 1.0 0.0 HOH
 3.421
 O
 O
1zbd 1 P63012 81.54 3e-118 X-RAY
 1999-04-02 ASP A:127 A:141 141.0 0.94 T -77.3 -33.9 141.0 0.94 0.0 GTP
HOH
 9.347
6.711
 OD2
OD2
 N2
O
4rkf 1 P25228 81.48 2e-115 X-RAY
 2014-12-10 ASP A:142 A:140 156.0 1.0 G -68.0 -18.2 156.0 1.0 0.0 HOH
 3.856
 O
 O
ASP B:142 B:140 156.0 1.0 G -64.8 -21.8 NA NA NA
3rab 1 P63012 89.35 2e-114 X-RAY
 1999-04-16 ASP A:124 A:141 156.0 1.0 G -69.4 -24.9 156.0 1.0 0.0 GNP
HOH
 9.930
3.297
 N
N
 N2
O
3dz8 1 P20337 86.13 1e-113 X-RAY
 2008-08-12 GLU A:142 A:141 143.0 0.753 G -61.3 -21.1 143.0 0.753 0.0 GDP
HOH
 7.442
5.974
 OE2
OE2
 N2
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-o95716-f1 1 O95716 100.0 4e-166 ASP A:141 A:141 175.0 1.0 G -67.8 -20.9