Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr19 11446426 . T A CCDS12257.1:NM_004283.3:c.262Acc>Tcc_NP_004274.1:p.88T>S Homo sapiens RAB3D, member RAS oncogene family (RAB3D), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
2gf9 1 O95716 100.0 6e-127 X-RAY
 2006-05-02 THR A:88 A:88 7.0 0.05 G -50.1 -45.1 7.0 0.05 0.0 HOH
 2.684
 OG1
 O
1zbd 1 P63012 81.54 3e-118 X-RAY
 1999-04-02 THR A:74 A:88 1.0 0.007 H -75.5 -37.5 1.0 0.007 0.0 GTP
HOH
 8.646
3.124
 CG2
OG1
 O1G
O
4rkf 1 P25228 81.48 2e-115 X-RAY
 2014-12-10 THR A:89 A:87 0.0 0.0 H -68.1 -37.3 0.0 0.0 0.0 GNP
MG
1PE
HOH
 8.299
9.412
7.968
2.852
 CG2
CG2
OG1
OG1
 O3G
MG
OH3
O
THR B:89 B:87 0.0 0.0 H -66.7 -37.1 NA NA NA
3rab 1 P63012 89.35 2e-114 X-RAY
 1999-04-16 THR A:71 A:88 2.0 0.014 H -71.6 -44.0 2.0 0.014 0.0 MG
GNP
HOH
 9.519
8.365
2.961
 CG2
CG2
OG1
 MG
O3G
O
3dz8 1 P20337 86.13 1e-113 X-RAY
 2008-08-12 THR A:89 A:88 10.0 0.071 H -66.1 -46.8 10.0 0.071 0.0 UNX
UNX
HOH
 7.827
9.586
7.257
 N
N
O
 UNK
UNK
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-o95716-f1 1 O95716 100.0 4e-166 THR A:88 A:88 1.0 0.007 H -63.4 -42.4