Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr19 11446435 . G A CCDS12257.1:NM_004283.3:c.253Cgc>Tgc_NP_004274.1:p.85R>C Homo sapiens RAB3D, member RAS oncogene family (RAB3D), mRNA.
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alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
2gf9 1 O95716 100.0 6e-127 X-RAY
 2006-05-02 ARG A:85 A:85 94.0 0.418 -79.5 66.0 94.0 0.418 0.0 HOH
 2.761
 O
 O
1zbd 1 P63012 81.54 3e-118 X-RAY
 1999-04-02 ARG A:71 A:85 57.0 0.253 H -46.8 -56.6 57.0 0.253 0.0 GTP
HOH
 7.847
3.080
 NH2
NH1
 O1G
O
4rkf 1 P25228 81.48 2e-115 X-RAY
 2014-12-10 ARG A:86 A:84 66.0 0.293 H -62.5 -41.5 66.0 0.293 0.0 GNP
1PE
HOH
 8.006
2.906
2.833
 NH2
NH1
NE
 O3G
OH5
O
ARG B:86 B:84 69.0 0.307 H -61.4 -42.4 NA NA NA
3rab 1 P63012 89.35 2e-114 X-RAY
 1999-04-16 ARG A:68 A:85 129.0 0.573 H -54.1 -52.3 129.0 0.573 0.0 HOH
 3.128
 CB
 O
3dz8 1 P20337 86.13 1e-113 X-RAY
 2008-08-12 ARG A:86 A:85 91.0 NA H -64.6 -50.8 91.0 NA NA UNX
UNX
HOH
 4.151
7.165
8.730
 N
C
O
 UNK
UNK
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-o95716-f1 1 O95716 100.0 4e-166 ARG A:85 A:85 72.0 0.32 H -55.1 -42.8