Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr19 11446452 . G A CCDS12257.1:NM_004283.3:c.236gCg>gTg_NP_004274.1:p.79A>V Homo sapiens RAB3D, member RAS oncogene family (RAB3D), mRNA.
pdb_id: 
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label_comp_id: 
auth_asym_id: 
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alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
2gf9 1 O95716 100.0 6e-127 X-RAY
 2006-05-02 ALA A:79 A:79 11.0 0.096 63.2 -139.3 11.0 0.096 0.0 MG
GDP
HOH
 4.100
5.072
2.743
 O
O
O
 MG
O1B
O
1zbd 1 P63012 81.54 3e-118 X-RAY
 1999-04-02 ALA A:65 A:79 2.0 0.017 -79.9 132.5 2.0 0.017 0.0 MG
GTP
HOH
 6.286
4.037
4.072
 CA
C
O
 MG
O1G
O
4rkf 1 P25228 81.48 2e-115 X-RAY
 2014-12-10 ALA A:80 A:78 2.0 0.017 -66.1 135.6 2.0 0.017 0.0 GNP
MG
1PE
1PE
HOH
 3.897
5.445
7.209
8.146
2.760
 C
CA
CB
O
O
 O3G
MG
C24
OH6
O
ALA B:80 B:78 1.0 0.009 -63.8 137.0 NA NA NA
3rab 1 P63012 89.35 2e-114 X-RAY
 1999-04-16 ALA A:62 A:79 3.0 0.026 -77.7 143.0 3.0 0.026 0.0 MG
GNP
HOH
 5.353
3.764
2.783
 CA
C
O
 MG
O3G
O
3dz8 1 P20337 86.13 1e-113 X-RAY
 2008-08-12 ALA A:80 A:79 39.0 0.339 H -64.7 -31.0 39.0 0.339 0.0 GDP
UNX
HOH
 7.916
3.378
3.892
 N
N
CB
 O2B
UNK
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-o95716-f1 1 O95716 100.0 4e-166 ALA A:79 A:79 2.0 0.017 -63.0 129.6