Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr19 12817415 . C A CCDS45991.1:NM_001136196.1:c.1465Ggc>Tgc_NP_001129668.1:p.489G>C Homo sapiens transportin 2 (TNPO2), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
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label_comp_id: 
auth_asym_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
2qmr 1 Q92973 84.39 0.0 X-RAY
 2007-10-30 SER A:492 A:492 112.0 0.974 S -70.8 -18.2 112.0 0.974 0.0
SER B:492 B:492 101.0 0.878 S -83.7 3.9 NA NA NA
SER C:492 C:492 98.0 0.852 S -84.7 3.1 NA NA NA
SER D:492 D:492 111.0 0.965 S -71.2 -18.2 NA NA NA
2z5j 1 Q92973 84.39 0.0 X-RAY
 2007-10-23 SER A:492 A:492 96.0 0.835 S -91.1 41.5 96.0 0.835 0.0
2z5k 1 Q92973 84.39 0.0 X-RAY
 2007-10-23 SER A:492 A:492 113.0 0.983 S -68.7 -18.4 113.0 0.983 0.0 HOH
 8.776
 O
 O
2z5m 1 Q92973 84.39 0.0 X-RAY
 2007-10-23 SER A:492 A:492 107.0 0.93 S -82.4 -9.0 107.0 0.93 0.0
2z5n 1 Q92973 84.39 0.0 X-RAY
 2007-10-23 SER A:492 A:492 103.0 0.896 S -65.4 -27.9 103.0 0.896 0.0
2z5o 1 Q92973 84.39 0.0 X-RAY
 2007-10-23 SER A:492 A:492 108.0 0.939 S -84.9 -13.5 108.0 0.939 0.0
4fq3 1 Q92973 84.39 0.0 X-RAY
 2013-08-21 SER A:492 A:492 110.0 0.957 S -65.5 -19.1 110.0 0.957 0.0
1qbk 1 Q92973 84.28 0.0 X-RAY
 1999-06-01 SER A:492 B:492 0.0 0.0 S 65.1 -160.0 0.0 0.0 0.0
5yvg 1 Q92973 83.26 0.0 X-RAY
 2018-05-16 SER A:470 A:492 126.0 1.0 S -82.3 -8.5 126.0 1.0 0.0
SER B:470 B:492 125.0 1.0 S -80.8 -8.4 NA NA NA
5yvh 1 Q92973 83.26 0.0 X-RAY
 2018-05-16 SER A:470 A:492 107.0 0.93 S -76.3 -17.6 107.0 0.93 0.0
5yvi 1 Q92973 83.26 0.0 X-RAY
 2018-05-16 SER A:470 A:492 107.0 0.93 S -84.0 -16.7 107.0 0.93 0.0
7cyl 1 Q92973 83.26 0.0 X-RAY
 2021-02-24 SER A:470 A:492 101.0 0.878 S -76.2 -17.7 101.0 0.878 0.0
2h4m 1 Q92973 83.04 0.0 X-RAY
 2006-10-24 SER A:467 A:492 27.0 0.235 S -74.6 -143.5 27.0 0.235 0.0
SER B:467 B:492 48.0 0.417 S 74.6 -156.6 48.0 0.417 0.0
5tqc 1 Q92973 82.92 0.0 X-RAY
 2017-02-15 SER A:468 A:492 110.0 0.957 S -78.8 -33.9 110.0 0.957 0.0
2ot8 1 Q92973 82.25 0.0 X-RAY
 2007-04-10 SER A:454 A:492 105.0 0.913 S -63.3 -42.7 105.0 0.913 0.0
SER B:454 B:492 100.0 0.87 S -83.9 -31.6 NA NA NA
4fdd 1 Q92973 82.25 0.0 X-RAY
 2012-07-18 SER A:454 A:492 103.0 0.896 S -76.2 -17.1 103.0 0.896 0.0 HOH
 3.034
 N
 O
4jlq 1 Q92973 81.81 0.0 X-RAY
 2013-04-03 SER A:456 A:492 108.0 0.939 S -70.3 -19.6 108.0 0.939 0.0
4oo6 1 Q92973 81.81 0.0 X-RAY
 2014-02-12 SER A:456 A:492 107.0 0.93 S -64.1 -23.0 107.0 0.93 0.0 HOH
 2.752
 OG
 O
5j3v 1 Q92973 81.81 0.0 X-RAY
 2016-09-21 SER A:456 A:492 92.0 0.8 S -70.7 -41.8 92.0 0.8 0.0
SER C:456 B:492 104.0 0.904 S -69.1 -29.8 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-o14787-f1 1 O14787 100.0 0.0 GLY A:489 A:489 16.0 0.213 S -73.7 -14.9
af-q92973-f1 1 Q92973 84.39 0.0 SER A:500 A:500 31.0 0.27 S -83.3 -12.8