Variant
Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr19 | 1399814 | . | C | A | CCDS12064.1:NM_000156.5:c.305tGg>tTg_NP_000147.1:p.102W>L | Homo sapiens guanidinoacetate N-methyltransferase (GAMT), transcript variant 1, mRNA. |
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PDB
Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
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PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
3orh | 1 | Q14353 | 100.0 | 3e-180 |
X-RAY |
2010-09-15 | TRP | A:102 | A:102 | 11.0 | 0.043 | H | -76.2 | -42.6 | 11.0 | 0.043 | 0.0 |
SAH HOH |
9.365 3.123 |
NE1 NE1 |
OXT O |
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TRP | B:102 | B:102 | 36.0 | 0.141 | H | -76.3 | -42.6 | NA | NA | NA | |||||||||||||
TRP | C:102 | C:102 | 32.0 | 0.125 | H | -76.1 | -42.4 | NA | NA | NA | |||||||||||||
TRP | D:102 | D:102 | 5.0 | 0.02 | H | -76.8 | -42.3 | NA | NA | NA | |||||||||||||
1xcj | 1 | P10868 | 87.18 | 6e-156 |
X-RAY |
2004-12-07 | TRP | A:101 | A:101 | 26.0 | 0.102 | H | -70.6 | -46.9 | 26.0 | 0.102 | 0.0 |
SAH HOH |
9.129 6.167 |
NE1 CD1 |
OXT O |
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1xcl | 1 | P10868 | 87.18 | 6e-156 |
X-RAY |
2004-12-07 | TRP | A:101 | A:101 | 19.0 | 0.075 | H | -69.5 | -47.3 | 19.0 | 0.075 | 0.0 |
SAH HOH |
9.225 3.328 |
NE1 CZ3 |
OXT O |
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1p1b | 1 | P10868 | 90.4 | 1e-134 |
X-RAY |
2003-04-29 | TRP | A:65 | A:101 | 30.0 | 0.118 | H | -57.7 | -45.4 | 30.0 | 0.118 | 0.0 |
SAH HOH |
9.512 3.905 |
CZ2 CD1 |
OXT O |
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TRP | B:65 | B:101 | 29.0 | 0.114 | H | -56.1 | -47.6 | 29.0 | 0.114 | 0.0 |
SAH HOH |
9.638 4.812 |
CZ2 CD1 |
OXT O |
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TRP | C:65 | C:101 | 30.0 | 0.118 | H | -58.6 | -45.3 | NA | NA | NA | |||||||||||||
TRP | D:65 | D:101 | 30.0 | 0.118 | H | -57.8 | -46.5 | NA | NA | NA | |||||||||||||
1p1c | 1 | P10868 | 90.4 | 1e-134 |
X-RAY |
2003-04-29 | TRP | A:65 | A:101 | 30.0 | 0.118 | H | -60.4 | -42.1 | 30.0 | 0.118 | 0.0 |
SAH HOH |
9.290 3.164 |
NE1 N |
OXT O |
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TRP | B:65 | B:101 | 23.0 | 0.09 | H | -62.1 | -50.7 | 23.0 | 0.09 | 0.0 |
SAH HOH |
9.681 4.203 |
NE1 N |
OXT O |
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1khh | 1 | P10868 | 90.36 | 8e-134 |
X-RAY |
2001-12-12 | TRP | A:64 | A:101 | 24.0 | 0.094 | H | -63.6 | -41.9 | 24.0 | 0.094 | 0.0 |
SAH HOH |
9.454 4.498 |
NE1 CD1 |
OXT O |
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TRP | B:64 | B:101 | 25.0 | 0.098 | H | -63.9 | -43.9 | 25.0 | 0.098 | 0.0 |
SAH HOH |
9.474 3.100 |
NE1 NE1 |
OXT O |
AlphaFold DB
Entity | Residue | Monomer | View | ||||||||||
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ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
af-q14353-f1 | 1 | Q14353 | 100.0 | 1e-180 | TRP | A:102 | A:102 | 17.0 | 0.067 | H | -80.0 | -43.1 |