Variant
Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr19 | 18311231 | . | G | A | CCDS12372.1:NM_002866.4:c.253Cgg>Tgg_NP_002857.1:p.85R>W | Homo sapiens RAB3A, member RAS oncogene family (RAB3A), mRNA. |
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PDB
Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
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PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
1zbd | 1 | P63012 | 98.49 | 2e-148 |
X-RAY |
1999-04-02 | ARG | A:71 | A:85 | 57.0 | 0.253 | H | -46.8 | -56.6 | 57.0 | 0.253 | 0.0 |
GTP HOH |
7.847 3.080 |
NH2 NH1 |
O1G O |
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6y7g | 1 | Q96E17 | 84.09 | 2e-141 |
X-RAY |
2021-03-31 | ARG | A:93 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA | ||||||
ARG | B:93 | B:93 | 159.0 | 0.707 | H | -58.2 | -49.5 | NA | NA | NA | |||||||||||||
3rab | 1 | P63012 | 100.0 | 1e-125 |
X-RAY |
1999-04-16 | ARG | A:68 | A:85 | 129.0 | 0.573 | H | -54.1 | -52.3 | 129.0 | 0.573 | 0.0 |
HOH |
3.128 |
CB |
O |
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4rkf | 1 | P25228 | 82.54 | 1e-117 |
X-RAY |
2014-12-10 | ARG | A:86 | A:84 | 66.0 | 0.293 | H | -62.5 | -41.5 | 66.0 | 0.293 | 0.0 |
GNP 1PE HOH |
8.006 2.906 2.833 |
NH2 NH1 NE |
O3G OH5 O |
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ARG | B:86 | B:84 | 69.0 | 0.307 | H | -61.4 | -42.4 | NA | NA | NA | |||||||||||||
3dz8 | 1 | P20337 | 86.13 | 1e-113 |
X-RAY |
2008-08-12 | ARG | A:86 | A:85 | 91.0 | NA | H | -64.6 | -50.8 | 91.0 | NA | NA |
UNX UNX HOH |
4.151 7.165 8.730 |
N C O |
UNK UNK O |
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2gf9 | 1 | O95716 | 88.82 | 2e-113 |
X-RAY |
2006-05-02 | ARG | A:85 | A:85 | 94.0 | 0.418 | -79.5 | 66.0 | 94.0 | 0.418 | 0.0 |
HOH |
2.761 |
O |
O |
AlphaFold DB
Entity | Residue | Monomer | View | ||||||||||
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ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
af-p20336-f1 | 1 | P20336 | 100.0 | 4e-168 | ARG | A:85 | A:85 | 84.0 | 0.373 | H | -54.3 | -41.8 | |
af-q96e17-f1 | 1 | Q96E17 | 84.09 | 9e-142 | ARG | A:93 | A:93 | 90.0 | 0.4 | H | -53.5 | -42.9 |